Homologs in group_1804

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12285 FBDBKF_12285 85.7 Morganella morganii S1 glpQ glycerophosphodiester phosphodiesterase
EHELCC_14020 EHELCC_14020 85.7 Morganella morganii S2 glpQ glycerophosphodiester phosphodiesterase
NLDBIP_15115 NLDBIP_15115 85.7 Morganella morganii S4 glpQ glycerophosphodiester phosphodiesterase
LHKJJB_15495 LHKJJB_15495 85.7 Morganella morganii S3 glpQ glycerophosphodiester phosphodiesterase
HKOGLL_14615 HKOGLL_14615 85.7 Morganella morganii S5 glpQ glycerophosphodiester phosphodiesterase
PMI_RS17860 PMI_RS17860 75.8 Proteus mirabilis HI4320 glpQ glycerophosphodiester phosphodiesterase

Distribution of the homologs in the orthogroup group_1804

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1804

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P09394 0.0 555 72 1 358 1 glpQ Glycerophosphodiester phosphodiesterase, periplasmic Escherichia coli (strain K12)
Q06282 2.91e-162 461 61 2 354 1 glpQ Glycerophosphodiester phosphodiesterase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O30405 2.18e-138 400 52 2 350 1 glpQ Glycerophosphodiester phosphodiesterase Treponema pallidum (strain Nichols)
Q9SD81 2.18e-31 125 31 13 345 2 GDPD6 Glycerophosphodiester phosphodiesterase GDPD6 Arabidopsis thaliana
Q9C907 2.18e-28 117 28 13 350 2 GDPD5 Glycerophosphodiester phosphodiesterase GDPD5 Arabidopsis thaliana
P37965 1.71e-22 99 29 12 325 1 glpQ Glycerophosphodiester phosphodiesterase Bacillus subtilis (strain 168)
O07592 4.47e-12 68 43 1 83 3 yhdW Putative glycerophosphodiester phosphodiesterase YhdW Bacillus subtilis (strain 168)
Q8RB32 2.97e-11 66 29 7 194 1 UgpQ Glycerophosphodiester phosphodiesterase Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
P9WMU3 3.21e-09 60 38 1 90 1 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WMU2 3.21e-09 60 38 1 90 3 glpQ1 Probable glycerophosphodiester phosphodiesterase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P54527 3.59e-09 60 24 14 326 4 yqiK Uncharacterized protein YqiK Bacillus subtilis (strain 168)
Q9HCC8 6.83e-07 54 33 1 89 1 GDPD2 Glycerophosphoinositol inositolphosphodiesterase GDPD2 Homo sapiens
Q9ESM6 9.4e-07 54 27 2 143 1 Gdpd2 Glycerophosphoinositol inositolphosphodiesterase GDPD2 Mus musculus
O14169 1.39e-06 53 39 2 88 3 SPAC4D7.02c Phosphatidylglycerol phospholipase C Schizosaccharomyces pombe (strain 972 / ATCC 24843)
A0A8F4N283 7.98e-06 50 44 0 56 1 bagdpd Glycerophosphodiester phosphodiesterase Bacillus altitudinis
Q9JL56 4.24e-05 48 42 0 66 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Mus musculus
Q9JL55 4.55e-05 48 42 0 66 1 Gde1 Glycerophosphodiester phosphodiesterase 1 Rattus norvegicus
Q9CRY7 8.15e-05 47 32 1 103 1 Gdpd1 Lysophospholipase D GDPD1 Mus musculus
Q9NZC3 8.52e-05 47 44 0 61 1 GDE1 Glycerophosphodiester phosphodiesterase 1 Homo sapiens
Q3T0T0 8.67e-05 47 43 0 66 2 GDE1 Glycerophosphodiester phosphodiesterase 1 Bos taurus
Q0VGK4 8.83e-05 47 32 1 103 2 Gdpd1 Lysophospholipase D GDPD1 Rattus norvegicus
Q8WTR4 0.000167 47 38 0 65 1 GDPD5 Glycerophosphodiester phosphodiesterase domain-containing protein 5 Homo sapiens
Q8N9F7 0.000209 46 42 0 61 1 GDPD1 Lysophospholipase D GDPD1 Homo sapiens
Q08959 0.000221 46 45 0 55 1 PGC1 Phosphatidylglycerol phospholipase C Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P75367 0.00039 45 41 0 58 4 MPN_420 Uncharacterized protein MG293 homolog Mycoplasma pneumoniae (strain ATCC 29342 / M129 / Subtype 1)
Q7L5L3 0.000474 45 48 0 50 1 GDPD3 Lysophospholipase D GDPD3 Homo sapiens
P47535 0.000528 44 41 0 51 4 MG293 Uncharacterized protein MG293 Mycoplasma genitalium (strain ATCC 33530 / DSM 19775 / NCTC 10195 / G37)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS17115
Feature type CDS
Gene glpQ
Product glycerophosphodiester phosphodiesterase
Location 52693 - 53766 (strand: 1)
Length 1074 (nucleotides) / 357 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000007
Length 196482 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1804
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03009 Glycerophosphoryl diester phosphodiesterase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0584 Lipid transport and metabolism (I) I Glycerophosphoryl diester phosphodiesterase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01126 glycerophosphoryl diester phosphodiesterase [EC:3.1.4.46] Glycerophospholipid metabolism -

Protein Sequence

MNLSRQFCIISALAGAVFCSTAAFAADSKIVIAHRGASGYLPEHTLPAKALAYAQGADYLEQDLVMTKDDELVVLHDHYLDRVTDVAQRFPDRARADGRYYAIDFTLAEIKSLKFTEGFDIKDGKQVQNYPGRFPMGKSDFRIHSFQEELEFIQGLNHSTGKNIGIYPEIKAPWFHRQEGKDITRKVLSVLKDYGYQTKDSPVYLQCFDPNELKRIKQELLPEMGMDVKLVQLIAYTDWQETFEQNADGKWVNYNYDWMMAPGAMSKIATYADGIGPDYHMLINKDSKAGHITLTPMAQDAHNSHLAIHPFTVRADALPPYAENVDQLFDVIYNKAGAEGLFTDFPDKGVKFLQKQQ

Flanking regions ( +/- flanking 50bp)

CTGCATCCTGAATGACGTTGGGTATACATTTTGTTAAGGAGAACCCCGTTATGAATTTGTCCCGTCAGTTTTGTATTATCAGCGCCCTTGCGGGCGCTGTATTTTGCAGTACCGCCGCTTTTGCGGCTGACAGTAAAATCGTGATTGCCCACCGGGGTGCCAGCGGTTATCTGCCGGAGCATACACTGCCCGCCAAAGCGCTGGCTTATGCTCAGGGTGCGGATTATCTGGAGCAGGATCTGGTGATGACCAAAGACGACGAACTGGTCGTTCTGCATGATCATTATCTGGATCGCGTAACCGACGTGGCTCAGCGTTTCCCGGACAGAGCGCGGGCGGATGGTCGTTATTATGCTATCGATTTCACCCTCGCGGAAATCAAATCCCTGAAATTCACTGAAGGGTTTGATATCAAAGACGGTAAACAGGTACAGAACTACCCTGGTCGTTTCCCGATGGGAAAATCAGATTTCCGTATTCACTCTTTTCAGGAAGAGCTGGAGTTTATTCAGGGTCTGAATCATTCAACCGGGAAAAATATCGGCATTTACCCTGAAATCAAAGCGCCGTGGTTCCATCGCCAGGAAGGCAAAGATATCACCCGCAAAGTGCTGTCAGTGCTGAAAGACTATGGTTATCAGACTAAAGATTCCCCGGTTTACCTGCAATGTTTTGATCCGAATGAGCTGAAACGGATTAAACAGGAACTGCTGCCGGAAATGGGGATGGACGTAAAACTGGTGCAGCTTATCGCTTACACCGACTGGCAGGAAACGTTTGAGCAGAATGCTGACGGTAAGTGGGTAAATTATAATTATGACTGGATGATGGCGCCGGGGGCGATGAGCAAAATCGCAACTTACGCGGACGGAATCGGACCTGATTATCACATGCTTATCAATAAAGATTCCAAAGCCGGTCATATCACACTGACGCCGATGGCACAGGATGCTCACAACAGCCACCTGGCTATTCACCCGTTTACTGTCCGCGCGGATGCCCTGCCGCCGTATGCGGAAAATGTCGACCAGTTATTTGATGTCATTTATAACAAAGCCGGTGCAGAAGGACTTTTTACCGACTTCCCGGATAAAGGCGTGAAGTTTTTGCAAAAACAGCAATAGCGTCTCAGCCATAAAAATAGTTTTTCCGCCGTAAAATATAACGGGCACTG