PF02872


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02872, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02872
Description 5'-nucleotidase, C-terminal domain

Occurence in the database

PF02872 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1499 FBDBKF_09675 32427 34376 -1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Morganella morganii S1
1 group_400 FBDBKF_16055 66690 68357 1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Morganella morganii S1
2 group_1499 EHELCC_04475 224392 226341 -1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Morganella morganii S2
3 group_400 EHELCC_18660 24124 25791 1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Morganella morganii S2
4 group_1499 NLDBIP_04475 224188 226137 -1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Morganella morganii S4
5 group_400 NLDBIP_17490 54129 55796 1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Morganella morganii S4
6 group_1499 LHKJJB_14155 109241 111190 1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Morganella morganii S3
7 group_400 LHKJJB_17170 392 2059 -1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Morganella morganii S3
8 group_1499 HKOGLL_12380 33208 35157 -1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Morganella morganii S5
9 group_400 HKOGLL_17225 54129 55796 1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Morganella morganii S5
10 group_1499 F4V73_RS00665 138886 140838 1 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Morganella psychrotolerans
11 group_400 F4V73_RS16215 52141 53808 -1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Morganella psychrotolerans
12 group_1499 PMI_RS00220 68271 70226 1 bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Proteus mirabilis HI4320
13 group_400 PMI_RS00230 71104 72726 1 bifunctional metallophosphatase/5'-nucleotidase Proteus mirabilis HI4320
14 group_400 PMI_RS10730 2359850 2361514 -1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA Proteus mirabilis HI4320