Homologs in group_400

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16055 FBDBKF_16055 83.2 Morganella morganii S1 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
EHELCC_18660 EHELCC_18660 83.2 Morganella morganii S2 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
NLDBIP_17490 NLDBIP_17490 83.2 Morganella morganii S4 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
LHKJJB_17170 LHKJJB_17170 83.2 Morganella morganii S3 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
HKOGLL_17225 HKOGLL_17225 83.2 Morganella morganii S5 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
F4V73_RS16215 F4V73_RS16215 81.6 Morganella psychrotolerans ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
PMI_RS00230 PMI_RS00230 29.0 Proteus mirabilis HI4320 - bifunctional metallophosphatase/5'-nucleotidase

Distribution of the homologs in the orthogroup group_400

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_400

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56878 0.0 886 78 2 553 3 ushA Protein UshA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P07024 0.0 833 71 2 553 1 ushA Protein UshA Escherichia coli (strain K12)
P06196 0.0 815 72 2 530 3 ushA Silent protein UshA(0) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9RN37 0.0 791 72 2 530 3 ushA Protein UshA Salmonella pullorum
Q9KQ30 0.0 725 63 3 553 3 nutA 5'-nucleotidase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8DFG4 0.0 710 61 3 547 3 nutA 5'-nucleotidase Vibrio vulnificus (strain CMCP6)
P22848 0.0 708 61 3 547 3 nutA 5'-nucleotidase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A9BJC1 3.3e-84 273 33 11 504 1 mggB Mannosylglucosyl-3-phosphoglycerate phosphatase Petrotoga mobilis (strain DSM 10674 / SJ95)
O34313 3.8e-50 189 29 18 556 1 yfkN Trifunctional nucleotide phosphoesterase protein YfkN Bacillus subtilis (strain 168)
O34313 2.56e-16 86 21 21 601 1 yfkN Trifunctional nucleotide phosphoesterase protein YfkN Bacillus subtilis (strain 168)
P52307 6.31e-39 153 25 16 567 1 None Protein 5NUC (Fragment) Rhipicephalus microplus
Q9XZ43 3.1e-33 137 26 14 564 1 5NUC Protein 5NUC Lutzomyia longipalpis
B6EWW8 1.94e-31 132 27 19 552 2 None Snake venom 5'-nucleotidase Gloydius brevicauda
F8S0Z7 2.27e-29 125 27 20 553 1 None Snake venom 5'-nucleotidase Crotalus adamanteus
B3A0N5 4.28e-29 124 25 22 556 1 APY Apyrase Tabanus yao
A0A2I4HXH5 2.59e-28 122 25 18 550 1 None Snake venom 5'-nucleotidase (Fragment) Naja atra
Q05927 1.21e-27 120 26 16 574 1 NT5E 5'-nucleotidase Bos taurus
E0D877 1.77e-27 120 24 21 577 1 APY Apyrase Aedes albopictus
P21589 6.39e-27 118 25 18 569 1 NT5E 5'-nucleotidase Homo sapiens
P54602 1.15e-26 119 25 15 497 1 yhcR Endonuclease YhcR Bacillus subtilis (strain 168)
Q61503 2.37e-26 116 25 15 548 1 Nt5e 5'-nucleotidase Mus musculus
P29240 3e-26 116 24 20 581 2 None 5'-nucleotidase Diplobatis ommata
O83142 4.15e-26 115 25 24 579 3 TP_0104 Probable 5'-nucleotidase Treponema pallidum (strain Nichols)
P21588 1.45e-22 105 25 18 551 1 Nt5e 5'-nucleotidase Rattus norvegicus
P44569 1.19e-20 99 25 22 600 1 HI_0206 NAD 5'-nucleotidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P50635 2.89e-20 97 23 20 564 1 APY Apyrase Aedes aegypti
P53052 1.21e-18 93 22 24 600 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Yersinia enterocolitica
P26265 1.72e-17 89 24 28 595 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P08331 6.63e-17 87 23 28 628 1 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Escherichia coli (strain K12)
P44764 1.9e-16 86 23 23 552 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8YAJ5 1.02e-11 71 22 25 614 1 lmo0130 Cell wall protein Lmo0130 Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
W8EFS0 1.99e-11 69 22 12 399 1 None Snake venom 5'-nucleotidase (Fragment) Macrovipera lebetina

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS10730
Feature type CDS
Gene ushA
Product bifunctional UDP-sugar hydrolase/5'-nucleotidase UshA
Location 2359850 - 2361514 (strand: -1)
Length 1665 (nucleotides) / 554 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_400
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase
PF02872 5'-nucleotidase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0737 Nucleotide transport and metabolism (F)
Defense mechanisms (V)		 FV 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family

Kegg Ortholog Annotation(s)

Protein Sequence

MSLSFKLSACALTVTLAMAPVMSQAWEKDKTYQITILHTNDHHGHFWHNDHGEYGLAAQKTVVDNIRDEVAKNGGSVLLLSGGDINTGVPESDLQDAEPDFKGMNLVGYDAMALGNHEFDNPLEVLRQQEKWATFPFLSANIYQKSTGERLFKPYTIFDKQGVKIAVLGLTTDDTVRIGNPANFPDTEFRKPADEAKKVVEELRTTEKPDIIIAATHMGHYDDGNHGSNAPGDVEMARALPKGYLDMIVGGHSQDPVCMSQENKNYKQADYVPGTPCAPDNQNGTWIVQAHEWGKYVGRADFEFRNGEFTLKHYQLIPINLNKKVKKEDGTTERVYYTEEIPHNPEMMKLLTPYQEKGGEQLNVKVGEVVGKLEGDRSKVRFEQTNMARLLLSAQAERANADFAIMSGGGVRDSIESGDITYKDVLKVQPFANELVYVDFKGEEVEPYLSAVACMKVDSGAYAQFYNVSLTVDADCKVSDVKIAGKPLDKTKNYRMATLNFNGIGGDGYPKIDSHPGYVNTGFVDAEVLKGYIEKHSPLKAADFEPQGEIVYKK

Flanking regions ( +/- flanking 50bp)

TGAATACAGGGCAGAGCCTTCTCAATAAATAATATACATGGGGATAGACCATGAGCTTATCGTTTAAATTATCTGCATGCGCACTGACAGTGACTTTAGCAATGGCGCCTGTGATGTCTCAGGCATGGGAAAAAGATAAAACTTACCAAATTACCATCCTACATACTAATGATCACCACGGTCACTTTTGGCACAATGATCATGGTGAGTACGGTTTAGCTGCTCAAAAAACCGTCGTTGACAATATTCGCGATGAAGTCGCTAAAAATGGCGGTAGCGTATTGCTTCTGTCTGGTGGTGATATTAATACGGGGGTTCCTGAATCTGATTTACAAGATGCAGAGCCTGATTTTAAAGGGATGAATCTTGTCGGTTATGACGCTATGGCGCTGGGTAATCATGAGTTTGATAATCCACTCGAAGTGCTACGCCAACAAGAAAAATGGGCTACTTTCCCTTTCCTTTCTGCGAATATTTATCAAAAAAGTACCGGTGAACGTTTATTTAAACCTTATACTATTTTTGATAAACAAGGAGTGAAAATCGCGGTATTAGGTTTAACTACCGATGATACTGTGCGTATTGGTAATCCTGCTAACTTCCCTGATACTGAGTTCCGTAAACCGGCAGATGAAGCGAAAAAAGTCGTTGAAGAATTACGTACCACAGAAAAACCCGATATTATTATCGCTGCTACCCATATGGGGCATTATGACGATGGTAATCATGGCTCTAATGCACCGGGTGATGTTGAAATGGCGCGTGCTTTGCCGAAAGGCTATTTAGATATGATTGTTGGTGGACACTCACAAGATCCGGTGTGTATGTCTCAAGAGAATAAAAATTACAAACAAGCAGATTATGTTCCCGGCACGCCTTGCGCTCCAGATAATCAAAATGGCACATGGATTGTTCAAGCCCATGAATGGGGTAAATATGTAGGTCGCGCTGATTTTGAGTTCCGTAATGGTGAGTTCACATTAAAACACTATCAGTTAATTCCAATTAACTTAAATAAGAAAGTGAAAAAAGAAGACGGAACCACTGAGCGAGTTTACTACACAGAGGAGATCCCTCATAACCCTGAAATGATGAAATTACTGACCCCTTATCAAGAGAAAGGTGGTGAGCAATTGAATGTGAAAGTGGGGGAAGTTGTTGGTAAATTAGAAGGCGATCGTAGCAAAGTTCGTTTTGAACAAACGAATATGGCGCGTTTACTGTTATCTGCTCAGGCGGAGCGTGCAAATGCTGATTTTGCCATTATGAGTGGTGGTGGTGTACGTGATTCGATTGAATCTGGCGATATTACTTATAAAGATGTATTAAAAGTACAACCCTTTGCTAACGAACTCGTCTATGTTGATTTCAAAGGTGAAGAAGTTGAACCTTACCTATCCGCAGTTGCTTGCATGAAAGTAGACTCAGGCGCTTATGCACAATTTTACAATGTAAGTTTAACCGTAGATGCAGATTGTAAAGTGAGTGATGTAAAAATTGCGGGCAAACCATTAGATAAAACTAAAAATTATCGTATGGCGACATTAAACTTTAACGGTATTGGTGGTGATGGTTATCCTAAGATTGATTCACACCCAGGATATGTCAATACCGGTTTTGTTGATGCAGAAGTGTTAAAAGGTTATATCGAAAAACACTCACCACTAAAAGCGGCTGATTTTGAACCGCAAGGCGAGATTGTGTATAAAAAATAGTATTTATTGAAAATATACAATAGATAATTCCCAAAAGGCGGCAGAGGATG