Orthogroup:group_1546


Homologs in group_1546

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10015 FBDBKF_10015 Morganella morganii S1 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
EHELCC_04815 EHELCC_04815 Morganella morganii S2 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
NLDBIP_04815 NLDBIP_04815 Morganella morganii S4 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
LHKJJB_13815 LHKJJB_13815 Morganella morganii S3 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
HKOGLL_12720 HKOGLL_12720 Morganella morganii S5 hisJ ABC-type amino acid transport/signal transduction system, periplasmic component/domain
F4V73_RS00320 F4V73_RS00320 Morganella psychrotolerans - glutamate/aspartate ABC transporter substrate-binding protein
PMI_RS02155 PMI_RS02155 Proteus mirabilis HI4320 - amino acid ABC transporter substrate-binding protein

Distribution of group_1546 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1546 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1546

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1546.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 hisJ 5
2 - 2

Product

# Product Occurence
1 ABC-type amino acid transport/signal transduction system, periplasmic component/domain 5
2 glutamate/aspartate ABC transporter substrate-binding protein 1
3 amino acid ABC transporter substrate-binding protein 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0834 7 ET Amino acid transport and metabolism (E)
Signal transduction mechanisms (T)		 ABC-type amino acid transport/signal transduction system, periplasmic component/domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K10001 7 glutamate/aspartate transport system substrate-binding protein ABC transporters
Two-component system		 -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00497 7 Bacterial extracellular solute-binding proteins, family 3

Annotations of the 33 SwissProt hits

Annotation Number of occurrences
ABC transporter arginine-binding protein 1
ABC transporter arginine-binding protein 1 1
ABC transporter glutamine-binding protein GlnH 1
Amino-acid-binding protein AabA 1
Arginine-binding extracellular protein ArtP 1
Cyclohexadienyl dehydratase 1
General L-amino acid-binding periplasmic protein AapJ 1
Glutamate/aspartate import solute-binding protein 2
Glutamate/glutamine/aspartate/asparagine-binding protein BztA 1
Glutamine-binding periplasmic protein 3
Glutamine-binding protein 1
Histidine-binding periplasmic protein 4
L-arginine-binding protein 1
L-cystine-binding protein TcyJ 2
L-glutamate/L-aspartate-binding protein 1
Lysine/arginine/ornithine-binding periplasmic protein 2
Major cell-binding factor 2
Membrane-bound lytic murein transglycosylase F 2
Probable amino-acid-binding protein YxeM 1
Probable histidine-binding protein 1
Putative amino-acid ABC transporter-binding protein PatH 1
Putative amino-acid ABC transporter-binding protein YhdW 2

Protein length

Min length 297
Max length 300
Mean length (sd) 298.1 (0.9)
Median length 298.0

Protein length distribution