Homologs in group_1499

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09675 FBDBKF_09675 78.1 Morganella morganii S1 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
EHELCC_04475 EHELCC_04475 78.1 Morganella morganii S2 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
NLDBIP_04475 NLDBIP_04475 78.1 Morganella morganii S4 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
LHKJJB_14155 LHKJJB_14155 78.1 Morganella morganii S3 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
HKOGLL_12380 HKOGLL_12380 78.1 Morganella morganii S5 ushA bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
F4V73_RS00665 F4V73_RS00665 78.3 Morganella psychrotolerans - bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase

Distribution of the homologs in the orthogroup group_1499

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1499

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P53052 0.0 965 70 0 627 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Yersinia enterocolitica
P08331 0.0 947 67 0 641 1 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Escherichia coli (strain K12)
P26265 0.0 941 68 0 641 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P44764 0.0 780 55 1 653 3 cpdB 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O34313 5.13e-170 526 44 10 599 1 yfkN Trifunctional nucleotide phosphoesterase protein YfkN Bacillus subtilis (strain 168)
O34313 3.78e-13 77 23 25 574 1 yfkN Trifunctional nucleotide phosphoesterase protein YfkN Bacillus subtilis (strain 168)
A9BJC1 2.44e-21 101 23 20 587 1 mggB Mannosylglucosyl-3-phosphoglycerate phosphatase Petrotoga mobilis (strain DSM 10674 / SJ95)
Q8DFG4 6.58e-21 100 25 19 497 3 nutA 5'-nucleotidase Vibrio vulnificus (strain CMCP6)
P22848 1.77e-20 99 24 17 494 3 nutA 5'-nucleotidase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q9KQ30 3.23e-19 95 24 17 494 3 nutA 5'-nucleotidase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P07024 1.27e-18 93 21 19 578 1 ushA Protein UshA Escherichia coli (strain K12)
Q56878 8.11e-18 90 24 20 558 3 ushA Protein UshA Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P06196 5.34e-15 82 22 18 556 3 ushA Silent protein UshA(0) Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
B6EWW8 1.18e-12 74 27 7 231 2 None Snake venom 5'-nucleotidase Gloydius brevicauda
Q9RN37 3.05e-12 73 21 18 556 3 ushA Protein UshA Salmonella pullorum
F8S0Z7 8.08e-12 72 27 7 226 1 None Snake venom 5'-nucleotidase Crotalus adamanteus
P54602 8.12e-12 72 23 22 550 1 yhcR Endonuclease YhcR Bacillus subtilis (strain 168)
A0A2I4HXH5 3e-11 70 29 8 217 1 None Snake venom 5'-nucleotidase (Fragment) Naja atra
P29240 3.91e-10 66 26 10 233 2 None 5'-nucleotidase Diplobatis ommata
B3A0N5 1.4e-09 64 21 22 547 1 APY Apyrase Tabanus yao
O83142 2.58e-09 63 22 28 586 3 TP_0104 Probable 5'-nucleotidase Treponema pallidum (strain Nichols)
Q8YAJ5 7.75e-09 62 23 25 561 1 lmo0130 Cell wall protein Lmo0130 Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q61503 2.43e-07 57 25 13 296 1 Nt5e 5'-nucleotidase Mus musculus
P21588 3.68e-07 57 27 9 222 1 Nt5e 5'-nucleotidase Rattus norvegicus
Q9XZ43 7.56e-07 55 22 15 361 1 5NUC Protein 5NUC Lutzomyia longipalpis
P21589 2.84e-06 54 26 9 219 1 NT5E 5'-nucleotidase Homo sapiens
Q05927 3.68e-06 53 27 8 215 1 NT5E 5'-nucleotidase Bos taurus
P52307 4.47e-06 53 22 7 243 1 None Protein 5NUC (Fragment) Rhipicephalus microplus
P07778 0.000382 45 26 7 197 4 None Uncharacterized protein in pqq-V 5'region (Fragment) Acinetobacter calcoaceticus
P44569 0.000812 46 22 23 582 1 HI_0206 NAD 5'-nucleotidase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS00220
Feature type CDS
Gene -
Product bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
Location 68271 - 70226 (strand: 1)
Length 1956 (nucleotides) / 651 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1499
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00149 Calcineurin-like phosphoesterase
PF02872 5'-nucleotidase, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0737 Nucleotide transport and metabolism (F)
Defense mechanisms (V)		 FV 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01119 2',3'-cyclic-nucleotide 2'-phosphodiesterase / 3'-nucleotidase [EC:3.1.4.16 3.1.3.6] Purine metabolism
Pyrimidine metabolism
Metabolic pathways		 -

Protein Sequence

MVKNVLKISTLAMLVAFNVNAATVDLRIMETSDVHSNLIDFDYFKDKPTEQFGYVRTANLIKAAKAEATNAILVDNGDLIQGSPLADYQAAKGLEKGEAHPAHQLMNTMGYTVGNFGNHEFNYGLDYLKKAIAGAEFPYINANIMDAKTGKNYFTPYIIVDTPVKDRDGKEHTIKIGYIGFVPPQILIWDKANLDGKVVVNDITETAKKFVPQMKKEGADLIVAIPHSGFSSEPYKAMAENSVYYLSEVDGINAIMFGHAHGVFPSKEFEGIKGVDVAKGTVNGVPAVMPGQWGDHLGVVDMVINNDSGKWVMTQATGEARPIFDKANKKALVERDAELAQIIEKAHQGTRDFVGKHIGKASANMYSFLALVQSDPTVQIVNDAQVDYTKHFIQGDPNLDGLPVLGAAAPFKAGGRKNAPADFVEVEKGDLTFRNAADLYLYPNTLVVVKATGADVVEWLECSAGMWNQVDPNSTKPQYLINWDGFRTYNFDTISGVEYKVDLTQPAKYDVDCQVVNKDANRIKNVTYQGKPIDPKATFLIATNNYRGYGGKFAGTGESNIAFASPDENRAILASYIAKQTKENGEVATKAANNWSFLPIKTDKQLDVRFETSPSEKAANFIKDFAQYPMTFVENDDIGFAIYKIDLTEKK

Flanking regions ( +/- flanking 50bp)

AAAGGAGAGCAACTGTGCTCTCCTGTTAACCAATATATAAGGGGTGTGTAATGGTTAAGAATGTGTTGAAAATCTCAACATTAGCAATGTTGGTCGCATTCAATGTGAATGCTGCGACAGTCGATCTCCGTATTATGGAGACTTCGGATGTTCACAGTAACTTAATCGACTTTGACTACTTCAAAGACAAACCAACAGAACAGTTTGGTTATGTTCGTACGGCAAATTTAATTAAAGCCGCGAAAGCTGAAGCAACCAATGCGATTTTAGTGGATAACGGTGACTTGATCCAAGGTAGTCCACTGGCTGACTATCAAGCAGCTAAAGGCTTAGAGAAAGGGGAAGCTCATCCAGCGCACCAGTTAATGAATACCATGGGGTATACCGTAGGTAACTTTGGTAATCATGAATTTAACTATGGTTTAGATTACCTGAAAAAAGCCATTGCGGGCGCTGAATTCCCATATATCAATGCCAATATCATGGATGCGAAAACAGGCAAAAACTATTTCACACCTTATATCATTGTTGATACACCAGTAAAAGATCGTGATGGCAAAGAGCACACTATCAAGATTGGTTATATCGGCTTTGTACCACCACAGATTTTAATCTGGGATAAAGCCAATCTGGATGGAAAAGTCGTTGTCAATGATATTACAGAAACAGCGAAAAAATTCGTTCCTCAAATGAAAAAAGAGGGTGCGGATCTGATTGTGGCTATCCCTCACTCTGGTTTCTCTTCTGAACCTTATAAAGCTATGGCTGAAAACTCAGTCTATTATCTGAGTGAAGTTGATGGCATTAACGCTATTATGTTTGGTCATGCTCACGGCGTATTCCCAAGTAAAGAATTTGAAGGCATTAAAGGTGTTGATGTTGCTAAAGGCACTGTAAATGGTGTTCCAGCAGTAATGCCTGGCCAATGGGGTGATCACTTAGGTGTTGTCGATATGGTTATCAATAACGACAGCGGCAAATGGGTGATGACCCAAGCAACGGGTGAAGCGCGTCCTATCTTTGATAAAGCAAACAAAAAAGCATTAGTTGAACGTGATGCCGAGTTAGCGCAAATCATTGAAAAAGCGCACCAAGGTACTCGTGATTTCGTCGGAAAACATATTGGTAAAGCGTCAGCTAATATGTATAGCTTCTTAGCTTTAGTACAAAGTGATCCAACGGTACAAATCGTTAACGATGCACAGGTTGATTATACTAAACACTTTATTCAAGGTGATCCGAACTTAGACGGCCTGCCAGTATTAGGTGCAGCAGCACCATTTAAAGCCGGCGGACGTAAAAATGCACCTGCAGACTTCGTTGAAGTAGAAAAGGGTGACTTAACATTCCGTAACGCAGCAGACTTATATCTGTATCCAAATACATTAGTGGTTGTAAAAGCAACCGGTGCAGATGTTGTTGAGTGGTTAGAATGTTCAGCGGGTATGTGGAACCAAGTTGATCCTAACTCAACTAAACCACAATACTTAATCAACTGGGATGGTTTCCGTACTTATAACTTCGACACTATCAGTGGCGTAGAGTATAAAGTTGATTTAACTCAGCCTGCTAAATATGACGTTGATTGCCAAGTTGTCAATAAAGATGCAAACCGTATCAAAAATGTCACTTACCAAGGCAAACCTATCGATCCTAAAGCAACTTTCTTAATTGCAACCAATAACTATCGTGGATACGGTGGTAAATTTGCGGGTACAGGTGAAAGCAATATCGCCTTTGCATCACCAGATGAAAACCGTGCAATCTTAGCTTCTTATATTGCTAAGCAAACGAAAGAAAATGGCGAAGTTGCAACAAAAGCTGCGAATAATTGGTCTTTCTTACCGATCAAGACAGATAAACAATTAGATGTTCGCTTTGAAACTTCACCAAGTGAAAAAGCCGCTAACTTTATTAAAGATTTTGCTCAGTATCCAATGACCTTTGTGGAAAATGACGATATCGGTTTTGCAATTTACAAAATCGACCTAACTGAGAAGAAATAATCTTATAGACCTGTCCATTCGGGCAGGTCGTTCTCATGTTTTGGCGTGAA