PF02463


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02463, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02463
Description RecF/RecN/SMC N terminal domain

Occurence in the database

PF02463 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_571 FBDBKF_01500 298192 299853 1 recN DNA repair protein RecN Morganella morganii S1
1 group_2081 FBDBKF_15575 44878 45960 -1 recF DNA replication/repair protein RecF Morganella morganii S1
2 group_571 EHELCC_00045 9015 10676 -1 recN DNA repair protein RecN Morganella morganii S2
3 group_2081 EHELCC_15935 44178 45260 -1 recF DNA replication/repair protein RecF Morganella morganii S2
4 group_571 NLDBIP_03415 669460 671121 1 recN DNA repair protein RecN Morganella morganii S4
5 group_2081 NLDBIP_16435 35403 36485 1 recF DNA replication/repair protein RecF Morganella morganii S4
6 group_571 LHKJJB_04930 276701 278362 1 recN DNA repair protein RecN Morganella morganii S3
7 group_2081 LHKJJB_16370 44178 45260 -1 recF DNA replication/repair protein RecF Morganella morganii S3
8 group_571 HKOGLL_02115 9220 10881 -1 recN DNA repair protein RecN Morganella morganii S5
9 group_2081 HKOGLL_16140 44178 45260 -1 recF DNA replication/repair protein RecF Morganella morganii S5
10 group_571 F4V73_RS01905 416940 418601 -1 recN DNA repair protein RecN Morganella psychrotolerans
11 group_2081 F4V73_RS17585 152083 153165 1 recF DNA replication/repair protein RecF Morganella psychrotolerans
12 group_571 PMI_RS09385 2047215 2048876 1 recN DNA repair protein RecN Proteus mirabilis HI4320
13 group_2081 PMI_RS15510 3448340 3449428 1 recF DNA replication/repair protein RecF Proteus mirabilis HI4320