PF02142


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02142, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF02142
Description MGS-like domain

Occurence in the database

PF02142 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1124 FBDBKF_06420 119642 122869 -1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S1
1 group_1263 FBDBKF_07365 159441 159899 -1 mgsA methylglyoxal synthase Morganella morganii S1
2 group_2306 FBDBKF_17710 37210 38799 -1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Morganella morganii S1
3 group_1263 EHELCC_03605 26287 26745 1 mgsA methylglyoxal synthase Morganella morganii S2
4 group_1124 EHELCC_09465 120214 123441 -1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S2
5 group_2306 EHELCC_18195 36586 38175 -1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Morganella morganii S2
6 group_1263 NLDBIP_03605 26083 26541 1 mgsA methylglyoxal synthase Morganella morganii S4
7 group_1124 NLDBIP_09845 120214 123441 -1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S4
8 group_2306 NLDBIP_17955 562 2151 1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Morganella morganii S4
9 group_1124 LHKJJB_07910 93797 97024 1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S3
10 group_1263 LHKJJB_09435 26197 26655 1 mgsA methylglyoxal synthase Morganella morganii S3
11 group_2306 LHKJJB_18150 562 2151 1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Morganella morganii S3
12 group_1124 HKOGLL_07460 93797 97024 1 carB carbamoyl-phosphate synthase large subunit Morganella morganii S5
13 group_1263 HKOGLL_09540 164397 164855 -1 mgsA methylglyoxal synthase Morganella morganii S5
14 group_2306 HKOGLL_18050 36586 38175 -1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Morganella morganii S5
15 group_1263 F4V73_RS01550 347876 348334 -1 methylglyoxal synthase Morganella psychrotolerans
16 group_2306 F4V73_RS15090 255903 257492 -1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Morganella psychrotolerans
17 group_1124 F4V73_RS15505 90926 94153 1 carB carbamoyl-phosphate synthase large subunit Morganella psychrotolerans
18 group_1124 PMI_RS00105 33316 36543 1 carB carbamoyl-phosphate synthase large subunit Proteus mirabilis HI4320
19 group_1263 PMI_RS03880 880644 881102 -1 methylglyoxal synthase Proteus mirabilis HI4320
20 group_2306 PMI_RS13670 3038234 3039823 1 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase Proteus mirabilis HI4320