PF02142
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF02142, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF02142 |
Description |
MGS-like domain |
Occurence in the database
PF02142 is associated with 21 different proteins (see tab "Protein list" and "Profile") |
The 21 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_1124 |
FBDBKF_06420 |
119642 |
122869 |
-1 |
carB |
carbamoyl-phosphate synthase large subunit |
Morganella morganii S1 |
1 |
group_1263 |
FBDBKF_07365 |
159441 |
159899 |
-1 |
mgsA |
methylglyoxal synthase |
Morganella morganii S1 |
2 |
group_2306 |
FBDBKF_17710 |
37210 |
38799 |
-1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Morganella morganii S1 |
3 |
group_1263 |
EHELCC_03605 |
26287 |
26745 |
1 |
mgsA |
methylglyoxal synthase |
Morganella morganii S2 |
4 |
group_1124 |
EHELCC_09465 |
120214 |
123441 |
-1 |
carB |
carbamoyl-phosphate synthase large subunit |
Morganella morganii S2 |
5 |
group_2306 |
EHELCC_18195 |
36586 |
38175 |
-1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Morganella morganii S2 |
6 |
group_1263 |
NLDBIP_03605 |
26083 |
26541 |
1 |
mgsA |
methylglyoxal synthase |
Morganella morganii S4 |
7 |
group_1124 |
NLDBIP_09845 |
120214 |
123441 |
-1 |
carB |
carbamoyl-phosphate synthase large subunit |
Morganella morganii S4 |
8 |
group_2306 |
NLDBIP_17955 |
562 |
2151 |
1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Morganella morganii S4 |
9 |
group_1124 |
LHKJJB_07910 |
93797 |
97024 |
1 |
carB |
carbamoyl-phosphate synthase large subunit |
Morganella morganii S3 |
10 |
group_1263 |
LHKJJB_09435 |
26197 |
26655 |
1 |
mgsA |
methylglyoxal synthase |
Morganella morganii S3 |
11 |
group_2306 |
LHKJJB_18150 |
562 |
2151 |
1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Morganella morganii S3 |
12 |
group_1124 |
HKOGLL_07460 |
93797 |
97024 |
1 |
carB |
carbamoyl-phosphate synthase large subunit |
Morganella morganii S5 |
13 |
group_1263 |
HKOGLL_09540 |
164397 |
164855 |
-1 |
mgsA |
methylglyoxal synthase |
Morganella morganii S5 |
14 |
group_2306 |
HKOGLL_18050 |
36586 |
38175 |
-1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Morganella morganii S5 |
15 |
group_1263 |
F4V73_RS01550 |
347876 |
348334 |
-1 |
|
methylglyoxal synthase |
Morganella psychrotolerans |
16 |
group_2306 |
F4V73_RS15090 |
255903 |
257492 |
-1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Morganella psychrotolerans |
17 |
group_1124 |
F4V73_RS15505 |
90926 |
94153 |
1 |
carB |
carbamoyl-phosphate synthase large subunit |
Morganella psychrotolerans |
18 |
group_1124 |
PMI_RS00105 |
33316 |
36543 |
1 |
carB |
carbamoyl-phosphate synthase large subunit |
Proteus mirabilis HI4320 |
19 |
group_1263 |
PMI_RS03880 |
880644 |
881102 |
-1 |
|
methylglyoxal synthase |
Proteus mirabilis HI4320 |
20 |
group_2306 |
PMI_RS13670 |
3038234 |
3039823 |
1 |
purH |
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase |
Proteus mirabilis HI4320 |