Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01751, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 35 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link | PF01751 |
---|---|
Description | Toprim domain |
Occurence in the database
PF01751 is associated with 35 different proteins (see tab "Protein list" and "Profile") |
The 35 proteins are classified into 5 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_940 | FBDBKF_05115 | 29121 | 31709 | -1 | topA | type I DNA topoisomerase | Morganella morganii S1 |
1 | group_976 | FBDBKF_05395 | 87191 | 89155 | -1 | topB | DNA topoisomerase IA | Morganella morganii S1 |
2 | group_1107 | FBDBKF_06310 | 95522 | 97417 | -1 | parE | DNA topoisomerase 4 subunit B | Morganella morganii S1 |
3 | group_2080 | FBDBKF_15570 | 42436 | 44850 | -1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Morganella morganii S1 |
4 | group_2434 | FBDBKF_19750 | 13364 | 15418 | 1 | topB | DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains | Morganella morganii S1 |
5 | group_1107 | EHELCC_09355 | 96094 | 97989 | -1 | parE | DNA topoisomerase 4 subunit B | Morganella morganii S2 |
6 | group_2434 | EHELCC_10845 | 207133 | 209187 | 1 | topB | DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains | Morganella morganii S2 |
7 | group_976 | EHELCC_12195 | 92339 | 94303 | 1 | topB | DNA topoisomerase IA | Morganella morganii S2 |
8 | group_940 | EHELCC_12475 | 149785 | 152373 | 1 | topA | type I DNA topoisomerase | Morganella morganii S2 |
9 | group_2080 | EHELCC_15930 | 41736 | 44150 | -1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Morganella morganii S2 |
10 | group_1107 | NLDBIP_09735 | 96094 | 97989 | -1 | parE | DNA topoisomerase 4 subunit B | Morganella morganii S4 |
11 | group_2434 | NLDBIP_11190 | 185404 | 187458 | 1 | topB | DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains | Morganella morganii S4 |
12 | group_976 | NLDBIP_12535 | 92294 | 94258 | 1 | topB | DNA topoisomerase IA | Morganella morganii S4 |
13 | group_940 | NLDBIP_12815 | 149740 | 152328 | 1 | topA | type I DNA topoisomerase | Morganella morganii S4 |
14 | group_2080 | NLDBIP_16440 | 36513 | 38927 | 1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Morganella morganii S4 |
15 | group_1107 | LHKJJB_08020 | 119249 | 121144 | 1 | parE | DNA topoisomerase 4 subunit B | Morganella morganii S3 |
16 | group_2434 | LHKJJB_10165 | 4070 | 6124 | -1 | topB | DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains | Morganella morganii S3 |
17 | group_976 | LHKJJB_12395 | 92339 | 94303 | 1 | topB | DNA topoisomerase IA | Morganella morganii S3 |
18 | group_940 | LHKJJB_12675 | 149785 | 152373 | 1 | topA | type I DNA topoisomerase | Morganella morganii S3 |
19 | group_2080 | LHKJJB_16365 | 41736 | 44150 | -1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Morganella morganii S3 |
20 | group_1107 | HKOGLL_07570 | 119249 | 121144 | 1 | parE | DNA topoisomerase 4 subunit B | Morganella morganii S5 |
21 | group_976 | HKOGLL_11010 | 92339 | 94303 | 1 | topB | DNA topoisomerase IA | Morganella morganii S5 |
22 | group_940 | HKOGLL_11290 | 149785 | 152373 | 1 | topA | type I DNA topoisomerase | Morganella morganii S5 |
23 | group_2080 | HKOGLL_16135 | 41736 | 44150 | -1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Morganella morganii S5 |
24 | group_2434 | HKOGLL_16330 | 4079 | 6133 | -1 | topB | DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains | Morganella morganii S5 |
25 | group_976 | F4V73_RS03900 | 825693 | 827609 | 1 | DNA topoisomerase III | Morganella psychrotolerans | |
26 | group_940 | F4V73_RS05570 | 1184169 | 1186769 | -1 | topA | type I DNA topoisomerase | Morganella psychrotolerans |
27 | group_1107 | F4V73_RS15610 | 116666 | 118561 | 1 | parE | DNA topoisomerase IV subunit B | Morganella psychrotolerans |
28 | group_2080 | F4V73_RS17590 | 153193 | 155607 | 1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Morganella psychrotolerans |
29 | group_940 | PMI_RS06435 | 1411151 | 1413748 | -1 | topA | type I DNA topoisomerase | Proteus mirabilis HI4320 |
30 | group_976 | PMI_RS07250 | 1586782 | 1588749 | -1 | DNA topoisomerase III | Proteus mirabilis HI4320 | |
31 | group_1107 | PMI_RS11600 | 2562862 | 2564757 | -1 | parE | DNA topoisomerase IV subunit B | Proteus mirabilis HI4320 |
32 | group_2434 | PMI_RS12960 | 2874365 | 2876419 | -1 | DNA topoisomerase III | Proteus mirabilis HI4320 | |
33 | group_2080 | PMI_RS15515 | 3449449 | 3451863 | 1 | gyrB | DNA topoisomerase (ATP-hydrolyzing) subunit B | Proteus mirabilis HI4320 |
34 | group_2434 | PMI_RS18625 | 18144 | 20462 | 1 | topB | type IA DNA topoisomerase | Proteus mirabilis HI4320 |