PF01751


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01751, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 35 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01751
Description Toprim domain

Occurence in the database

PF01751 is associated with 35 different proteins (see tab "Protein list" and "Profile")
The 35 proteins are classified into 5 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_940 FBDBKF_05115 29121 31709 -1 topA type I DNA topoisomerase Morganella morganii S1
1 group_976 FBDBKF_05395 87191 89155 -1 topB DNA topoisomerase IA Morganella morganii S1
2 group_1107 FBDBKF_06310 95522 97417 -1 parE DNA topoisomerase 4 subunit B Morganella morganii S1
3 group_2080 FBDBKF_15570 42436 44850 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S1
4 group_2434 FBDBKF_19750 13364 15418 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S1
5 group_1107 EHELCC_09355 96094 97989 -1 parE DNA topoisomerase 4 subunit B Morganella morganii S2
6 group_2434 EHELCC_10845 207133 209187 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S2
7 group_976 EHELCC_12195 92339 94303 1 topB DNA topoisomerase IA Morganella morganii S2
8 group_940 EHELCC_12475 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S2
9 group_2080 EHELCC_15930 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S2
10 group_1107 NLDBIP_09735 96094 97989 -1 parE DNA topoisomerase 4 subunit B Morganella morganii S4
11 group_2434 NLDBIP_11190 185404 187458 1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S4
12 group_976 NLDBIP_12535 92294 94258 1 topB DNA topoisomerase IA Morganella morganii S4
13 group_940 NLDBIP_12815 149740 152328 1 topA type I DNA topoisomerase Morganella morganii S4
14 group_2080 NLDBIP_16440 36513 38927 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S4
15 group_1107 LHKJJB_08020 119249 121144 1 parE DNA topoisomerase 4 subunit B Morganella morganii S3
16 group_2434 LHKJJB_10165 4070 6124 -1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S3
17 group_976 LHKJJB_12395 92339 94303 1 topB DNA topoisomerase IA Morganella morganii S3
18 group_940 LHKJJB_12675 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S3
19 group_2080 LHKJJB_16365 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S3
20 group_1107 HKOGLL_07570 119249 121144 1 parE DNA topoisomerase 4 subunit B Morganella morganii S5
21 group_976 HKOGLL_11010 92339 94303 1 topB DNA topoisomerase IA Morganella morganii S5
22 group_940 HKOGLL_11290 149785 152373 1 topA type I DNA topoisomerase Morganella morganii S5
23 group_2080 HKOGLL_16135 41736 44150 -1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella morganii S5
24 group_2434 HKOGLL_16330 4079 6133 -1 topB DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains Morganella morganii S5
25 group_976 F4V73_RS03900 825693 827609 1 DNA topoisomerase III Morganella psychrotolerans
26 group_940 F4V73_RS05570 1184169 1186769 -1 topA type I DNA topoisomerase Morganella psychrotolerans
27 group_1107 F4V73_RS15610 116666 118561 1 parE DNA topoisomerase IV subunit B Morganella psychrotolerans
28 group_2080 F4V73_RS17590 153193 155607 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Morganella psychrotolerans
29 group_940 PMI_RS06435 1411151 1413748 -1 topA type I DNA topoisomerase Proteus mirabilis HI4320
30 group_976 PMI_RS07250 1586782 1588749 -1 DNA topoisomerase III Proteus mirabilis HI4320
31 group_1107 PMI_RS11600 2562862 2564757 -1 parE DNA topoisomerase IV subunit B Proteus mirabilis HI4320
32 group_2434 PMI_RS12960 2874365 2876419 -1 DNA topoisomerase III Proteus mirabilis HI4320
33 group_2080 PMI_RS15515 3449449 3451863 1 gyrB DNA topoisomerase (ATP-hydrolyzing) subunit B Proteus mirabilis HI4320
34 group_2434 PMI_RS18625 18144 20462 1 topB type IA DNA topoisomerase Proteus mirabilis HI4320