Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01627, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 21 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_432 | FBDBKF_00375 | 47826 | 50540 | 1 | rcsD | phosphotransferase RcsD | Morganella morganii S1 |
1 | group_484 | FBDBKF_00795 | 145412 | 147484 | -1 | cheA | chemotaxis protein CheA | Morganella morganii S1 |
2 | group_713 | FBDBKF_03095 | 17386 | 19719 | -1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Morganella morganii S1 |
3 | group_484 | EHELCC_00750 | 161384 | 163456 | 1 | cheA | chemotaxis protein CheA | Morganella morganii S2 |
4 | group_432 | EHELCC_01170 | 258328 | 261042 | -1 | rcsD | phosphotransferase RcsD | Morganella morganii S2 |
5 | group_713 | EHELCC_07440 | 227384 | 229717 | 1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Morganella morganii S2 |
6 | group_432 | NLDBIP_02290 | 419094 | 421808 | 1 | rcsD | phosphotransferase RcsD | Morganella morganii S4 |
7 | group_484 | NLDBIP_02710 | 516680 | 518752 | -1 | cheA | chemotaxis protein CheA | Morganella morganii S4 |
8 | group_713 | NLDBIP_07765 | 227257 | 229590 | 1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Morganella morganii S4 |
9 | group_432 | LHKJJB_03805 | 26335 | 29049 | 1 | rcsD | phosphotransferase RcsD | Morganella morganii S3 |
10 | group_484 | LHKJJB_04225 | 123921 | 125993 | -1 | cheA | chemotaxis protein CheA | Morganella morganii S3 |
11 | group_713 | LHKJJB_07300 | 191003 | 193336 | 1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Morganella morganii S3 |
12 | group_484 | HKOGLL_02820 | 161589 | 163661 | 1 | cheA | chemotaxis protein CheA | Morganella morganii S5 |
13 | group_432 | HKOGLL_03240 | 258533 | 261247 | -1 | rcsD | phosphotransferase RcsD | Morganella morganii S5 |
14 | group_713 | HKOGLL_03630 | 40051 | 42384 | -1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Morganella morganii S5 |
15 | group_432 | F4V73_RS06355 | 1320008 | 1322722 | 1 | rcsD | phosphotransferase RcsD | Morganella psychrotolerans |
16 | group_484 | F4V73_RS06795 | 1410338 | 1412392 | -1 | cheA | chemotaxis protein CheA | Morganella psychrotolerans |
17 | group_713 | F4V73_RS11825 | 519430 | 521763 | 1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Morganella psychrotolerans |
18 | group_484 | PMI_RS08145 | 1779883 | 1782102 | -1 | cheA | chemotaxis protein CheA | Proteus mirabilis HI4320 |
19 | group_432 | PMI_RS08485 | 1845004 | 1847697 | 1 | rcsD | phosphotransferase RcsD | Proteus mirabilis HI4320 |
20 | group_713 | PMI_RS18300 | 4018571 | 4020907 | 1 | arcB | aerobic respiration two-component sensor histidine kinase ArcB | Proteus mirabilis HI4320 |