Homologs in group_432

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_00375 FBDBKF_00375 100.0 Morganella morganii S1 rcsD phosphotransferase RcsD
EHELCC_01170 EHELCC_01170 100.0 Morganella morganii S2 rcsD phosphotransferase RcsD
NLDBIP_02290 NLDBIP_02290 100.0 Morganella morganii S4 rcsD phosphotransferase RcsD
HKOGLL_03240 HKOGLL_03240 100.0 Morganella morganii S5 rcsD phosphotransferase RcsD
F4V73_RS06355 F4V73_RS06355 87.7 Morganella psychrotolerans rcsD phosphotransferase RcsD
PMI_RS08485 PMI_RS08485 41.7 Proteus mirabilis HI4320 rcsD phosphotransferase RcsD

Distribution of the homologs in the orthogroup group_432

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_432

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P39838 1.09e-115 377 29 7 873 1 rcsD Phosphotransferase RcsD Escherichia coli (strain K12)
Q56128 1.33e-15 85 22 14 467 3 rcsC Sensor histidine kinase RcsC Salmonella typhi
P58662 1.97e-15 84 21 11 463 3 rcsC Sensor histidine kinase RcsC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0DMC5 8.38e-15 82 22 15 467 1 rcsC Sensor histidine kinase RcsC Escherichia coli (strain K12)
P0DMC6 1e-14 82 22 14 462 1 rcsC Sensor histidine kinase RcsC Escherichia coli
Q9KLK7 1.14e-14 82 25 7 298 1 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P54302 2.95e-10 68 21 4 296 1 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio harveyi
Q87GU5 3.88e-09 64 21 6 351 3 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
Q8D5Z6 5.14e-08 60 19 3 287 3 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio vulnificus (strain CMCP6)
Q7MD16 5.41e-08 60 19 3 287 3 luxQ Autoinducer 2 sensor kinase/phosphatase LuxQ Vibrio vulnificus (strain YJ016)
P35164 5.8e-08 60 22 7 244 1 resE Sensor histidine kinase ResE Bacillus subtilis (strain 168)
Q54YH4 3.84e-07 58 21 3 235 1 dhkB Hybrid signal transduction histidine kinase B Dictyostelium discoideum
P30855 2.04e-06 55 21 5 274 1 evgS Sensor protein EvgS Escherichia coli (strain K12)
Q86CZ2 6.77e-06 53 26 10 249 1 dhkK Hybrid signal transduction histidine kinase K Dictyostelium discoideum
P26762 7.99e-06 53 21 4 262 3 bvgS Virulence sensor protein BvgS Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
P40330 1.35e-05 53 21 4 262 3 bvgS Virulence sensor protein BvgS Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
P58402 1.37e-05 53 31 2 96 3 evgS Sensor protein EvgS Escherichia coli O157:H7
P16575 1.93e-05 52 20 4 262 1 bvgS Virulence sensor protein BvgS Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P58356 2.34e-05 52 23 9 239 3 torS Sensor protein TorS Escherichia coli O157:H7
P0AEC5 3.1e-05 51 22 4 235 1 barA Signal transduction histidine-protein kinase BarA Escherichia coli (strain K12)
P0AEC6 3.1e-05 51 22 4 235 1 barA Signal transduction histidine-protein kinase BarA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AEC7 3.1e-05 51 22 4 235 3 barA Signal transduction histidine-protein kinase BarA Escherichia coli O157:H7
P59342 3.32e-05 51 22 4 235 3 barA Signal transduction histidine-protein kinase BarA Shigella flexneri
P39453 0.000144 49 22 9 239 1 torS Sensor protein TorS Escherichia coli (strain K12)
Q9F8D7 0.000249 48 20 5 301 3 gacS Sensor histidine kinase GacS Pseudomonas protegens (strain DSM 19095 / LMG 27888 / CFBP 6595 / CHA0)
P48027 0.000305 48 21 2 241 3 gacS Sensor protein GacS Pseudomonas syringae pv. syringae
Q4L8M0 0.000389 47 22 6 244 3 hssS Heme sensor protein HssS Staphylococcus haemolyticus (strain JCSC1435)
P0AEC4 0.000639 47 22 4 140 3 arcB Aerobic respiration control sensor protein ArcB Shigella flexneri
P0AEC3 0.000639 47 22 4 140 1 arcB Aerobic respiration control sensor protein ArcB Escherichia coli (strain K12)
P58363 0.000639 47 22 4 140 3 arcB Aerobic respiration control sensor protein ArcB Escherichia coli O157:H7
Q7A5H7 0.000868 46 20 6 230 1 srrB Sensor protein SrrB Staphylococcus aureus (strain N315)
Q99TZ9 0.000868 46 20 6 230 3 srrB Sensor protein SrrB Staphylococcus aureus (strain Mu50 / ATCC 700699)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_03805
Feature type CDS
Gene rcsD
Product phosphotransferase RcsD
Location 26335 - 29049 (strand: 1)
Length 2715 (nucleotides) / 904 (amino acids)

Contig

Accession ZDB_361
Length 286024 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_432
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01627 Hpt domain
PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
PF16359 RcsD-ABL domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0642 Signal transduction mechanisms (T) T Signal transduction histidine kinase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07676 two-component system, NarL family, sensor histidine kinase RcsD [EC:2.7.13.3] Two-component system
Biofilm formation - Escherichia coli		 -

Protein Sequence

MYRQSHSKPYAIPGFYASFVSLLVLSLFLYGYNYYDAWLGSKKGALYSFSTRIEHQIETYRYQSAELFRLANTTDTEKRPELVPPHKILNDIYWIDSRVPVVDAILFGQTNDETYAIARRFSDYLTILWGGENQFNSVYYLNGLDNSLLLVTSHSALRPELRYRESPLTLGADEKRAEMLADSTALDERETLSSFTKMPSESTYYYTYRAMFNNPGQLTSVVAFDLPVNNLVPDNLDLSNLSLIPAETHTLSNRPNAVQISINGLSLKLSYRLREMPYQVVYQLSLLSLAEEMLAANIWLLISVFLFSMLSVGGLVYIRKRFISPLNTLVRQARNSEAITNEIVAQLPIGLAIYDFAANKRLVSNTIASQLLTLSDLNKTRDMAREHQGRIQTTIDNVVYEVSMNPVRNMNDTYLILFRDVDQEALTARRLQLSDREYKKSIKARQSVLSNIRSELVVPVKQLGNDLHTLAPYVTDPAGGMLMDKVVTESGYLCEWIENIILLADLESDDWKPTNDEFLLSQTVEDIVKQFSRQINDKGIPLYFHNSINKQLNYIGDGPIISKIFLLLLNYAVSNLKYGKLVIRLKNIFKNEHNNIRLEIIASGSGLPQSDLVNLHDPFMFQVAETEGRPNSGLAFYLCDLLCKKLSGELKIDSKPDIGTHYTVELPLPATEMIGEPSEVLEDTLFKINIINPSIREIINAIIIENGGILFDKNRALLQDEYDILITDFDKKARKPILFLRNDIIEHRMITPSLVECNYNFNDEILNAITLLIEQSLTSDEFDDRFLPGDPGINTAALSVGEVVALYKNQLAQSTYKDLFATTVPPDISKMYTEAELSELQPLALTVHRVKGVFAVLDFDYLKSRCEDIERCIADKNKMKVDEGIREIDAIVTELLQQGNQEYE

Flanking regions ( +/- flanking 50bp)

TCCCGGTGAATTTACAGTCAAGTACTTACTATAAGGTCGCAACGGAACATATGTACAGACAGTCACATTCCAAGCCTTATGCGATACCCGGCTTTTATGCATCATTTGTTTCGTTATTAGTCTTATCTCTCTTTTTATACGGATATAACTATTACGATGCCTGGCTGGGAAGCAAAAAAGGCGCACTCTACAGTTTCAGCACACGGATAGAACATCAGATTGAAACGTACCGCTATCAGTCCGCTGAGCTGTTCCGGCTCGCCAATACCACGGACACCGAGAAGCGGCCTGAGCTCGTTCCGCCGCATAAGATCCTGAATGATATTTACTGGATTGACAGCCGTGTGCCGGTTGTGGATGCCATCCTGTTCGGCCAGACCAATGATGAGACCTACGCCATCGCACGGCGTTTTTCAGACTATCTGACCATTCTGTGGGGCGGTGAAAATCAGTTTAATTCTGTATATTACCTCAACGGACTGGATAACAGTCTGCTGCTGGTGACATCCCATTCTGCCCTGCGTCCGGAGCTGCGCTACCGCGAAAGCCCGCTGACATTGGGTGCCGATGAAAAACGGGCGGAAATGCTGGCGGATTCCACAGCGCTGGATGAGCGGGAAACCCTCTCCTCCTTTACCAAGATGCCGTCAGAATCAACCTATTACTATACCTACCGCGCAATGTTTAATAACCCCGGTCAGCTGACCAGCGTGGTGGCGTTTGATTTACCGGTGAATAACCTGGTGCCGGATAATCTGGATCTGTCCAATCTGTCACTGATCCCGGCCGAGACCCACACCCTCAGCAACCGTCCGAATGCGGTGCAGATCAGTATTAACGGCCTGTCACTGAAACTCAGTTACCGTCTGCGTGAAATGCCGTATCAGGTGGTTTATCAGCTCTCACTGCTATCTCTGGCCGAAGAGATGCTGGCGGCCAATATCTGGCTGTTAATTTCTGTCTTCCTGTTCAGTATGCTCTCCGTCGGCGGCCTTGTTTATATCCGCAAACGGTTCATTTCCCCGCTCAATACACTGGTCCGCCAGGCCAGAAACAGTGAGGCGATAACCAATGAAATTGTGGCGCAACTGCCTATCGGGCTGGCGATTTATGATTTTGCCGCCAATAAACGGCTGGTCAGTAATACCATCGCCAGTCAGTTGCTGACCCTCAGCGACCTGAACAAAACCCGCGATATGGCCCGCGAGCACCAGGGCCGGATCCAGACCACTATTGATAACGTGGTTTATGAAGTCAGTATGAATCCGGTCCGTAATATGAATGATACTTATCTGATTCTGTTCCGGGATGTGGATCAGGAAGCACTGACTGCGCGCCGTCTGCAATTGTCTGACCGTGAGTATAAGAAAAGTATCAAAGCCCGTCAGTCTGTGCTGTCAAATATCCGTTCAGAGCTGGTGGTGCCGGTCAAACAGCTCGGTAATGACCTGCATACGCTGGCACCGTATGTGACTGATCCCGCCGGCGGCATGCTGATGGATAAAGTGGTAACGGAATCCGGTTATCTGTGTGAGTGGATCGAAAATATTATTCTGCTGGCTGACCTGGAAAGTGATGACTGGAAACCGACCAATGATGAATTCCTGTTGTCACAGACCGTCGAAGATATCGTTAAACAATTCTCACGTCAGATAAATGACAAAGGCATTCCGCTTTATTTCCATAACAGTATTAATAAACAGCTGAATTACATTGGTGACGGCCCTATTATCAGTAAGATATTTTTATTATTACTGAATTACGCCGTCAGTAATTTAAAATACGGAAAATTGGTTATTCGCCTTAAGAATATATTTAAAAATGAACATAATAATATCAGATTGGAAATAATCGCCAGCGGCTCCGGTCTGCCGCAATCTGATCTCGTGAATCTGCACGATCCGTTTATGTTTCAGGTCGCGGAGACGGAAGGTCGTCCGAACTCGGGGCTGGCATTCTATTTGTGTGATTTATTATGTAAAAAACTCAGCGGAGAGCTGAAAATAGACAGTAAACCAGACATCGGCACACACTACACTGTCGAGTTGCCGCTGCCTGCCACCGAGATGATCGGTGAGCCGTCAGAGGTGCTGGAAGATACGCTGTTTAAGATCAATATCATTAATCCGAGTATTCGGGAAATAATTAACGCAATTATAATTGAAAACGGCGGAATTTTATTTGATAAAAATCGCGCATTATTGCAAGATGAATATGACATCCTGATAACTGACTTTGATAAGAAAGCGAGAAAGCCAATACTCTTTTTACGAAATGACATTATTGAACACAGAATGATTACGCCTTCCCTGGTGGAGTGTAATTATAATTTCAATGATGAAATTCTGAATGCTATTACGCTGCTTATCGAACAAAGCTTAACTTCGGATGAGTTTGATGATAGATTCTTACCCGGGGATCCGGGTATTAATACAGCAGCGCTTTCCGTCGGGGAAGTTGTTGCGTTATATAAAAATCAGCTGGCACAAAGTACGTATAAAGACTTGTTTGCCACCACAGTCCCTCCTGATATAAGTAAGATGTACACGGAAGCAGAATTAAGTGAATTGCAGCCACTGGCGCTGACAGTACATCGGGTCAAAGGGGTCTTTGCTGTGCTCGACTTTGATTATCTGAAATCACGCTGTGAAGATATAGAACGCTGTATCGCTGACAAAAACAAAATGAAGGTGGATGAAGGTATCCGGGAAATTGATGCCATTGTCACTGAATTGCTGCAGCAAGGTAACCAAGAGTATGAATAACCTGAATGTTATTATCGCTGATGACCATCCTATTGTTCTGTTCGGGATAA