PF01588


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01588, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 26 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01588
Description Putative tRNA binding domain

Occurence in the database

PF01588 is associated with 26 different proteins (see tab "Protein list" and "Profile")
The 26 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_499 FBDBKF_00930 170524 170865 -1 csaA tRNA-binding protein Morganella morganii S1
1 group_1184 FBDBKF_06825 27830 29863 -1 metG methionine--tRNA ligase Morganella morganii S1
2 group_3323 FBDBKF_11075 38909 39241 -1 metG tRNA-binding protein Morganella morganii S1
3 group_1806 FBDBKF_13400 57497 59884 -1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S1
4 group_499 EHELCC_00615 138003 138344 1 csaA tRNA-binding protein Morganella morganii S2
5 group_1184 EHELCC_04145 156323 158356 1 metG methionine--tRNA ligase Morganella morganii S2
6 group_3323 EHELCC_05150 20227 20559 1 metG tRNA-binding protein Morganella morganii S2
7 group_1806 EHELCC_08695 215307 217694 1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S2
8 group_499 NLDBIP_02845 541792 542133 -1 csaA tRNA-binding protein Morganella morganii S4
9 group_1184 NLDBIP_04145 156119 158152 1 metG methionine--tRNA ligase Morganella morganii S4
10 group_3323 NLDBIP_05470 61292 61624 1 metG tRNA-binding protein Morganella morganii S4
11 group_1806 NLDBIP_09020 215307 217694 1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S4
12 group_3323 LHKJJB_02350 38816 39148 1 metG tRNA-binding protein Morganella morganii S3
13 group_499 LHKJJB_04360 149033 149374 -1 csaA tRNA-binding protein Morganella morganii S3
14 group_1806 LHKJJB_05245 39465 41852 -1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S3
15 group_1184 LHKJJB_09975 156233 158266 1 metG methionine--tRNA ligase Morganella morganii S3
16 group_499 HKOGLL_02685 138208 138549 1 csaA tRNA-binding protein Morganella morganii S5
17 group_1806 HKOGLL_05670 199898 202285 1 pheT phenylalanine--tRNA ligase subunit beta Morganella morganii S5
18 group_1184 HKOGLL_09000 32786 34819 -1 metG methionine--tRNA ligase Morganella morganii S5
19 group_3323 HKOGLL_15730 62256 62588 1 metG tRNA-binding protein Morganella morganii S5
20 group_1184 F4V73_RS00975 206387 208420 -1 metG methionine--tRNA ligase Morganella psychrotolerans
21 group_1806 F4V73_RS03360 715927 718314 1 pheT phenylalanine--tRNA ligase subunit beta Morganella psychrotolerans
22 group_499 F4V73_RS06925 1436676 1437017 -1 tRNA-binding protein Morganella psychrotolerans
23 group_1184 PMI_RS03185 702245 704272 -1 metG methionine--tRNA ligase Proteus mirabilis HI4320
24 group_499 PMI_RS05010 1095725 1096078 1 tRNA-binding protein Proteus mirabilis HI4320
25 group_1806 PMI_RS05050 1102762 1105149 1 pheT phenylalanine--tRNA ligase subunit beta Proteus mirabilis HI4320