Orthogroup:group_1244


Homologs in group_1244

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07235 FBDBKF_07235 Morganella morganii S1 ldtD L,D-transpeptidase
EHELCC_03735 EHELCC_03735 Morganella morganii S2 ldtD L,D-transpeptidase
NLDBIP_03735 NLDBIP_03735 Morganella morganii S4 ldtD L,D-transpeptidase
LHKJJB_09565 LHKJJB_09565 Morganella morganii S3 ldtD L,D-transpeptidase
HKOGLL_09410 HKOGLL_09410 Morganella morganii S5 ldtD L,D-transpeptidase
F4V73_RS01420 F4V73_RS01420 Morganella psychrotolerans ldtD L,D-transpeptidase
PMI_RS03590 PMI_RS03590 Proteus mirabilis HI4320 ldtD L,D-transpeptidase

Distribution of group_1244 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1244 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1244

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1244.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ldtD 7

Product

# Product Occurence
1 L,D-transpeptidase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG2989 7 M Cell wall/membrane/envelope biogenesis (M) Murein L,D-transpeptidase YcbB/YkuD

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K21470 7 L,D-transpeptidase YcbB - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01471 7 Putative peptidoglycan binding domain
PF03734 7 L,D-transpeptidase catalytic domain
PF20142 7 Scaffold domain

Annotations of the 2 SwissProt hits

Annotation Number of occurrences
Probable L,D-transpeptidase YcbB 1
Putative L,D-transpeptidase HI_1667 1

Protein length

Min length 571
Max length 584
Mean length (sd) 577.1 (3.8)
Median length 577.0

Protein length distribution