Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF01551
Protein list: lists the 22 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.
Description
External link | PF01551 |
---|---|
Description | Peptidase family M23 |
Occurence in the database
PF01551 is associated with 22 different proteins |
The 22 proteins are classified into 3 different orthogroup(s) |
Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
---|---|---|---|---|---|---|---|---|
0 | group_713 | FBDBKF_02090 | 105691 | 107073 | 1 | mepM | murein DD-endopeptidase MepM | Morganella morganii S1 |
1 | group_2206 | FBDBKF_16330 | 54022 | 55305 | -1 | envC | Murein hydrolase activator EnvC | Morganella morganii S1 |
2 | group_379 | FBDBKF_18970 | 12138 | 13259 | -1 | nlpD | murein hydrolase activator NlpD | Morganella morganii S1 |
3 | group_713 | EHELCC_02560 | 493511 | 494893 | 1 | mepM | murein DD-endopeptidase MepM | Morganella morganii S2 |
4 | group_2206 | EHELCC_16365 | 54022 | 55305 | -1 | envC | Murein hydrolase activator EnvC | Morganella morganii S2 |
5 | group_379 | EHELCC_18715 | 12138 | 13259 | -1 | nlpD | murein hydrolase activator NlpD | Morganella morganii S2 |
6 | group_713 | NLDBIP_00900 | 185243 | 186625 | -1 | mepM | murein DD-endopeptidase MepM | Morganella morganii S4 |
7 | group_2206 | NLDBIP_16975 | 6865 | 8148 | 1 | envC | Murein hydrolase activator EnvC | Morganella morganii S4 |
8 | group_379 | NLDBIP_18590 | 12254 | 13375 | 1 | nlpD | murein hydrolase activator NlpD | Morganella morganii S4 |
9 | group_713 | LHKJJB_01135 | 206060 | 207442 | 1 | mepM | murein DD-endopeptidase MepM | Morganella morganii S3 |
10 | group_2206 | LHKJJB_16895 | 9967 | 11250 | 1 | envC | Murein hydrolase activator EnvC | Morganella morganii S3 |
11 | group_379 | LHKJJB_18585 | 12138 | 13259 | -1 | nlpD | murein hydrolase activator NlpD | Morganella morganii S3 |
12 | group_713 | HKOGLL_01175 | 211571 | 212953 | 1 | mepM | murein DD-endopeptidase MepM | Morganella morganii S5 |
13 | group_2206 | HKOGLL_16945 | 54022 | 55305 | -1 | envC | Murein hydrolase activator EnvC | Morganella morganii S5 |
14 | group_379 | HKOGLL_18320 | 12138 | 13259 | -1 | nlpD | murein hydrolase activator NlpD | Morganella morganii S5 |
15 | group_713 | F4V73_RS04455 | 941703 | 943061 | 1 | mepM | murein DD-endopeptidase MepM | Morganella psychrotolerans |
16 | group_379 | F4V73_RS05050 | 1075935 | 1076411 | 1 | peptidoglycan DD-metalloendopeptidase family protein | Morganella psychrotolerans | |
17 | group_379 | F4V73_RS13880 | 413571 | 414680 | -1 | nlpD | murein hydrolase activator NlpD | Morganella psychrotolerans |
18 | group_2206 | F4V73_RS17250 | 81217 | 82428 | 1 | envC | murein hydrolase activator EnvC | Morganella psychrotolerans |
19 | group_713 | PMI_RS05565 | 1213205 | 1214533 | 1 | mepM | murein DD-endopeptidase MepM | Proteus mirabilis HI4320 |
20 | group_379 | PMI_RS11020 | 2427069 | 2428193 | -1 | nlpD | murein hydrolase activator NlpD | Proteus mirabilis HI4320 |
21 | group_2206 | PMI_RS15725 | 3493643 | 3494935 | -1 | envC | murein hydrolase activator EnvC | Proteus mirabilis HI4320 |