PF01235


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01235, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01235
Description Sodium:alanine symporter family

Occurence in the database

PF01235 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_888 FBDBKF_04580 113517 114896 -1 alsT Na+/alanine symporter Morganella morganii S1
1 group_2176 FBDBKF_16380 440 1894 1 alsT Na+/alanine symporter Morganella morganii S1
2 group_3004 FBDBKF_17605 16844 18280 1 alsT Na+/alanine symporter Morganella morganii S1
3 group_888 EHELCC_05870 172974 174353 -1 alsT Na+/alanine symporter Morganella morganii S2
4 group_2176 EHELCC_08245 117426 118880 1 alsT Na+/alanine symporter Morganella morganii S2
5 group_3004 EHELCC_18090 16220 17656 1 alsT Na+/alanine symporter Morganella morganii S2
6 group_888 NLDBIP_06190 214039 215418 -1 alsT Na+/alanine symporter Morganella morganii S4
7 group_2176 NLDBIP_08570 117426 118880 1 alsT Na+/alanine symporter Morganella morganii S4
8 group_3004 NLDBIP_18060 21081 22517 -1 alsT Na+/alanine symporter Morganella morganii S4
9 group_888 LHKJJB_03070 191563 192942 -1 alsT Na+/alanine symporter Morganella morganii S3
10 group_2176 LHKJJB_05695 138279 139733 -1 alsT Na+/alanine symporter Morganella morganii S3
11 group_3004 LHKJJB_18255 21081 22517 -1 alsT Na+/alanine symporter Morganella morganii S3
12 group_2176 HKOGLL_05220 102017 103471 1 alsT Na+/alanine symporter Morganella morganii S5
13 group_888 HKOGLL_06545 113427 114806 -1 alsT Na+/alanine symporter Morganella morganii S5
14 group_3004 HKOGLL_17945 16220 17656 1 alsT Na+/alanine symporter Morganella morganii S5
15 group_2176 F4V73_RS02905 616896 618350 1 sodium:alanine symporter family protein Morganella psychrotolerans
16 group_888 F4V73_RS09035 1888209 1889624 -1 sodium:alanine symporter family protein Morganella psychrotolerans
17 group_3004 F4V73_RS14985 235535 236914 1 amino acid carrier protein Morganella psychrotolerans
18 group_2176 PMI_RS07815 1711047 1712516 -1 sodium:alanine symporter family protein Proteus mirabilis HI4320
19 group_888 PMI_RS10415 2287454 2288854 -1 sodium:alanine symporter family protein Proteus mirabilis HI4320