Homologs in group_3004

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_17605 FBDBKF_17605 95.4 Morganella morganii S1 alsT Na+/alanine symporter
EHELCC_18090 EHELCC_18090 95.4 Morganella morganii S2 alsT Na+/alanine symporter
NLDBIP_18060 NLDBIP_18060 95.4 Morganella morganii S4 alsT Na+/alanine symporter
LHKJJB_18255 LHKJJB_18255 95.4 Morganella morganii S3 alsT Na+/alanine symporter
HKOGLL_17945 HKOGLL_17945 95.4 Morganella morganii S5 alsT Na+/alanine symporter

Distribution of the homologs in the orthogroup group_3004

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3004

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O34708 1.39e-62 213 34 7 437 3 yflA Uncharacterized transporter YflA Bacillus subtilis (strain 168)
P44917 2.11e-59 204 34 12 444 3 HI_0883 Uncharacterized transporter HI_0883 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q6LX42 2.27e-56 196 33 13 456 1 agcS Sodium/alanine symporter AgcS Methanococcus maripaludis (strain DSM 14266 / JCM 13030 / NBRC 101832 / S2 / LL)
P44555 9.32e-51 182 33 5 388 3 HI_0183 Uncharacterized transporter HI_0183 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P30144 2.9e-50 182 36 7 321 1 dagA Na(+)-linked D-alanine glycine permease Pseudoalteromonas haloplanktis
P30144 6.79e-06 52 29 2 120 1 dagA Na(+)-linked D-alanine glycine permease Pseudoalteromonas haloplanktis
O31464 7.05e-48 174 31 9 448 3 glnT Probable sodium/glutamine symporter GlnT Bacillus subtilis (strain 168)
O32060 4.33e-45 167 31 9 438 3 yrbD Putative sodium/proton-dependent alanine carrier protein YrbD Bacillus subtilis (strain 168)
Q45068 6.97e-42 157 29 11 460 2 alsT Amino-acid carrier protein AlsT Bacillus subtilis (strain 168)
P30143 9.5e-41 155 29 12 438 3 yaaJ Uncharacterized transporter YaaJ Escherichia coli (strain K12)
P30145 1.66e-38 148 31 9 404 1 acp Sodium/proton-dependent alanine carrier protein Bacillus sp. (strain PS3)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS14985
Feature type CDS
Gene -
Product amino acid carrier protein
Location 235535 - 236914 (strand: 1)
Length 1380 (nucleotides) / 459 (amino acids)

Contig

Accession term accessions NZ_VXKB01000004 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 258164 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3004
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF01235 Sodium:alanine symporter family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1115 Amino acid transport and metabolism (E) E Na+/alanine symporter

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03310 alanine or glycine:cation symporter, AGCS family - -

Protein Sequence

MPILLVSLGIWLTIKFRFKYQFNFRFNIKNTYGGLFNKKGISEKLQGAGSVSSFAAACTALANTVGIGSIGGVATAITMGGPGAIFWLWFSAFFGIATKACEIILGQRYRVKYEKSMDEYVCDRSFVMEHALGWKKGAVALSVCCFMLGPWTCLVQSESATSSIEEAFNVDSYLTLIVMVIFIASVIIGGLKGISSKMESVVPKLAITYLTVAVILLVMNYDQILAAFALIFKSAFSPAAGVGGFAGATVMEAIRFGIARGIYSNDAGTGYGIVAHAAATTDHPIRQSSWGFGEVFLTIIICTVTALAILTTNVWVDYPGITSSRLTTLAFKVTYGDVGSWFMAIFITLLACTTTIGMYFTCEKAVNFFFGDTKANKIAKNLYRVYYLAPIILFSNLQADILWALTDILSAVYVLITMILILSQRKEIFRLFNDFWGRYIPAKNAGEDVPPVTFCKRID

Flanking regions ( +/- flanking 50bp)

CAATACTAAATATAATTAATCAGTTTTCAGATTTTATCTGGACGTATCCGATGCCAATTTTATTAGTCAGTCTCGGCATCTGGTTAACCATTAAATTCCGTTTTAAATACCAATTTAATTTTCGGTTTAATATAAAGAATACATACGGCGGTTTATTTAATAAAAAAGGTATCAGTGAAAAACTTCAGGGAGCCGGTTCGGTATCCAGTTTTGCAGCGGCCTGTACCGCATTGGCTAATACCGTCGGGATCGGCAGTATCGGCGGGGTTGCCACCGCAATTACGATGGGCGGTCCGGGCGCAATATTCTGGCTTTGGTTTTCCGCTTTCTTTGGTATTGCGACCAAAGCGTGTGAAATTATTCTCGGGCAGCGTTACCGCGTCAAATATGAAAAATCCATGGATGAATATGTCTGTGACCGCTCATTTGTGATGGAGCATGCACTGGGCTGGAAAAAAGGCGCGGTGGCACTTTCTGTCTGCTGCTTTATGCTCGGGCCGTGGACGTGCCTGGTACAGAGCGAATCAGCAACATCCTCCATTGAAGAAGCCTTTAATGTCGACAGTTATCTGACCCTGATTGTGATGGTTATTTTTATTGCCAGTGTCATCATCGGTGGCTTGAAAGGCATTTCTTCCAAAATGGAAAGTGTGGTACCGAAACTGGCAATTACCTATCTGACCGTTGCGGTGATCCTACTGGTGATGAATTACGATCAGATTCTTGCTGCATTTGCCCTGATTTTTAAATCTGCATTTTCACCGGCTGCCGGTGTCGGCGGATTTGCCGGTGCAACAGTCATGGAAGCTATCCGTTTTGGTATTGCCCGTGGTATTTACTCTAATGATGCAGGAACTGGTTACGGCATTGTCGCTCATGCGGCAGCTACGACGGATCACCCTATCCGCCAGTCAAGCTGGGGGTTTGGTGAAGTTTTCCTGACCATTATTATTTGTACAGTAACGGCATTAGCGATTCTGACAACCAATGTCTGGGTTGATTACCCCGGAATTACATCATCGCGCCTGACAACATTAGCGTTTAAAGTGACGTATGGTGATGTTGGCAGCTGGTTTATGGCGATATTTATTACATTGCTGGCCTGTACAACAACCATTGGTATGTATTTTACCTGCGAAAAAGCGGTTAACTTTTTCTTCGGTGATACAAAAGCCAATAAAATAGCGAAAAATTTGTATCGCGTTTATTATCTGGCGCCAATTATTTTATTCAGTAATTTACAGGCTGATATTTTATGGGCGCTGACGGATATTTTAAGTGCAGTTTATGTACTGATTACGATGATATTAATTCTGAGTCAGCGGAAAGAAATTTTCCGGTTATTTAATGATTTCTGGGGACGTTATATCCCGGCAAAAAATGCCGGAGAAGATGTGCCGCCGGTGACATTTTGTAAGCGGATAGACTAAAAAAAACGGGCCGGAAAAATACCGGCCCGCTTTATTTTACCGCCCCAGAT