PF01228


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01228, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01228
Description Glycine radical

Occurence in the database

PF01228 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_567 FBDBKF_01480 294880 295263 -1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S1
1 group_292 FBDBKF_07130 95104 97386 -1 pflB formate C-acetyltransferase Morganella morganii S1
2 group_567 EHELCC_00065 13605 13988 1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S2
3 group_292 EHELCC_03840 88800 91082 1 pflB formate C-acetyltransferase Morganella morganii S2
4 group_567 NLDBIP_03395 666148 666531 -1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S4
5 group_292 NLDBIP_03840 88596 90878 1 pflB formate C-acetyltransferase Morganella morganii S4
6 group_567 LHKJJB_04910 273389 273772 -1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S3
7 group_292 LHKJJB_09670 88710 90992 1 pflB formate C-acetyltransferase Morganella morganii S3
8 group_567 HKOGLL_02135 13810 14193 1 grcA autonomous glycyl radical cofactor GrcA Morganella morganii S5
9 group_292 HKOGLL_09305 100060 102342 -1 pflB formate C-acetyltransferase Morganella morganii S5
10 group_292 F4V73_RS01315 282838 285120 -1 pflB formate C-acetyltransferase Morganella psychrotolerans
11 group_567 F4V73_RS01925 421381 421764 1 grcA autonomous glycyl radical cofactor GrcA Morganella psychrotolerans
12 group_292 PMI_RS03470 770068 772350 -1 pflB formate C-acetyltransferase Proteus mirabilis HI4320
13 group_567 PMI_RS09365 2044027 2044410 -1 grcA autonomous glycyl radical cofactor GrcA Proteus mirabilis HI4320
14 group_292 PMI_RS13385 2965296 2968724 -1 cutC choline trimethylamine-lyase Proteus mirabilis HI4320