Orthogroup:group_642


Homologs in group_642

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_02105 FBDBKF_02105 Morganella morganii S1 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
EHELCC_02575 EHELCC_02575 Morganella morganii S2 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
NLDBIP_00885 NLDBIP_00885 Morganella morganii S4 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
LHKJJB_01150 LHKJJB_01150 Morganella morganii S3 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
HKOGLL_01190 HKOGLL_01190 Morganella morganii S5 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
F4V73_RS04470 F4V73_RS04470 Morganella psychrotolerans - MurR/RpiR family transcriptional regulator
PMI_RS05580 PMI_RS05580 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator

Distribution of group_642 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_642 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_642

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_642.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rpiR 5
2 - 2

Product

# Product Occurence
1 DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains 5
2 MurR/RpiR family transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1737 7 K Transcription (K) DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K19337 7 RpiR family transcriptional regulator, carbohydrate utilization regulator - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01380 7 SIS domain
PF01418 7 Helix-turn-helix domain, rpiR family

Annotations of the 58 SwissProt hits

Annotation Number of occurrences
Bifunctional protein glk 7
HTH-type transcriptional regulator HexR 3
HTH-type transcriptional regulator MurR 26
HTH-type transcriptional regulator RpiR 2
N-acetylmuramic acid 6-phosphate etherase 9
Uncharacterized HTH-type transcriptional regulator CA_C0191 1
Uncharacterized HTH-type transcriptional regulator CPE0189 1
Uncharacterized HTH-type transcriptional regulator HI_0143 1
Uncharacterized HTH-type transcriptional regulator TM_0326 1
Uncharacterized HTH-type transcriptional regulator TTE0211 1
Uncharacterized HTH-type transcriptional regulator YbbH 1
Uncharacterized HTH-type transcriptional regulator YfhH 1
Uncharacterized HTH-type transcriptional regulator in aarA 3'region 1
Uncharacterized protein AF_1796 1
Uncharacterized protein APE_1940.1 1
Uncharacterized protein RP505 1

Protein length

Min length 280
Max length 282
Mean length (sd) 281.7 (0.8)
Median length 282.0

Protein length distribution