PF01063


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01063, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01063
Description Amino-transferase class IV

Occurence in the database

PF01063 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_305 FBDBKF_08170 7296 8222 1 ilvE branched-chain amino acid transaminase Morganella morganii S1
1 group_1962 FBDBKF_14700 38071 38910 -1 pabC aminodeoxychorismate lyase Morganella morganii S1
2 group_305 EHELCC_13355 155503 156195 -1 ilvE branched-chain-amino-acid transaminase Morganella morganii S2
3 group_1962 EHELCC_15505 68147 68986 -1 pabC aminodeoxychorismate lyase Morganella morganii S2
4 group_305 NLDBIP_13695 155503 156429 -1 ilvE branched-chain amino acid transaminase Morganella morganii S4
5 group_1962 NLDBIP_16035 68147 68986 -1 pabC aminodeoxychorismate lyase Morganella morganii S4
6 group_305 LHKJJB_12860 6014 6940 1 ilvE branched-chain amino acid transaminase Morganella morganii S3
7 group_1962 LHKJJB_15805 47700 48539 1 pabC aminodeoxychorismate lyase Morganella morganii S3
8 group_305 HKOGLL_12170 155503 156429 -1 ilvE branched-chain amino acid transaminase Morganella morganii S5
9 group_1962 HKOGLL_14925 46912 47751 1 pabC aminodeoxychorismate lyase Morganella morganii S5
10 group_1962 F4V73_RS07495 1566712 1567551 -1 pabC aminodeoxychorismate lyase Morganella psychrotolerans
11 group_305 F4V73_RS18700 6249 7175 1 branched-chain amino acid transaminase Morganella psychrotolerans
12 group_1962 PMI_RS04240 953762 954589 1 pabC aminodeoxychorismate lyase Proteus mirabilis HI4320
13 group_305 PMI_RS08325 1817238 1818095 -1 D-amino-acid transaminase Proteus mirabilis HI4320
14 group_305 PMI_RS16410 3617882 3618808 1 branched-chain amino acid transaminase Proteus mirabilis HI4320