Homologs in group_1962

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_14700 FBDBKF_14700 45.1 Morganella morganii S1 pabC aminodeoxychorismate lyase
EHELCC_15505 EHELCC_15505 45.1 Morganella morganii S2 pabC aminodeoxychorismate lyase
NLDBIP_16035 NLDBIP_16035 45.1 Morganella morganii S4 pabC aminodeoxychorismate lyase
LHKJJB_15805 LHKJJB_15805 45.1 Morganella morganii S3 pabC aminodeoxychorismate lyase
HKOGLL_14925 HKOGLL_14925 45.1 Morganella morganii S5 pabC aminodeoxychorismate lyase
F4V73_RS07495 F4V73_RS07495 42.9 Morganella psychrotolerans pabC aminodeoxychorismate lyase

Distribution of the homologs in the orthogroup group_1962

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1962

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P28305 4.94e-82 250 49 2 261 1 pabC Aminodeoxychorismate lyase Escherichia coli (strain K12)
Q56693 9.2e-61 196 38 2 258 3 pabC Aminodeoxychorismate lyase Vibrio harveyi
Q9KQI0 3.13e-59 192 40 2 252 3 pabC Aminodeoxychorismate lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
P28821 6.22e-22 95 25 3 256 3 pabC Aminodeoxychorismate lyase Bacillus subtilis (strain 168)
Q58414 6.13e-20 90 26 7 256 3 ilvE Putative branched-chain-amino-acid aminotransferase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O29329 1.87e-18 86 23 3 242 1 ilvE Putative branched-chain-amino-acid aminotransferase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9ASR4 1.32e-15 79 26 6 248 2 At5g27410 Branched-chain-amino-acid aminotransferase-like protein 2 Arabidopsis thaliana
Q8W0Z7 2e-13 73 25 6 248 2 At3g05190 Branched-chain-amino-acid aminotransferase-like protein 1 Arabidopsis thaliana
P54692 4.74e-13 70 25 8 243 3 dat D-alanine aminotransferase Bacillus licheniformis
Q79FW0 1.26e-10 63 24 10 270 1 Rv0812 Bifunctional aminodeoxychorismate lyase / D-amino acid transaminase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
O07597 4.4e-10 62 25 9 248 3 dat D-alanine aminotransferase Bacillus subtilis (strain 168)
P19938 5.57e-10 62 24 8 251 1 dat D-alanine aminotransferase Bacillus sp. (strain YM-1)
O05970 8e-10 61 23 7 280 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia prowazekii (strain Madrid E)
Q1RIJ2 9.25e-10 61 21 7 269 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia bellii (strain RML369-C)
O27481 1.13e-09 61 23 9 264 3 ilvE Putative branched-chain-amino-acid aminotransferase Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
P0AB80 1.28e-09 61 21 6 259 1 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli (strain K12)
P0AB81 1.28e-09 61 21 6 259 3 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AB82 1.28e-09 61 21 6 259 3 ilvE Branched-chain-amino-acid aminotransferase Escherichia coli O157:H7
Q4ULR3 1.64e-09 60 22 6 260 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9AKE5 2.19e-09 60 23 6 260 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia typhi (strain ATCC VR-144 / Wilmington)
P0A1A5 4.47e-09 59 21 6 259 1 ilvE Branched-chain-amino-acid aminotransferase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A1A6 4.47e-09 59 21 6 259 3 ilvE Branched-chain-amino-acid aminotransferase Salmonella typhi
Q6G8H7 7.74e-09 58 23 10 259 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MSSA476)
Q92I26 1.61e-08 57 23 8 268 3 ilvE Probable branched-chain-amino-acid aminotransferase Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q5HF24 2.53e-08 57 23 10 259 3 dat D-alanine aminotransferase Staphylococcus aureus (strain COL)
P99090 2.55e-08 57 23 10 259 1 dat D-alanine aminotransferase Staphylococcus aureus (strain N315)
P63511 2.55e-08 57 23 10 259 3 dat D-alanine aminotransferase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q8NW24 2.62e-08 57 23 10 259 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MW2)
Q6GFV1 2.62e-08 57 23 10 259 3 dat D-alanine aminotransferase Staphylococcus aureus (strain MRSA252)
O86428 5.95e-08 56 21 7 261 1 ilvE Branched-chain-amino-acid aminotransferase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P54693 9.86e-08 55 25 7 246 3 dat D-alanine aminotransferase Lysinibacillus sphaericus
P74921 1.61e-07 54 23 6 256 1 ilvE Probable branched-chain-amino-acid aminotransferase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q8CS41 1.72e-07 54 22 11 262 3 dat D-alanine aminotransferase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNG0 1.72e-07 54 22 11 262 3 dat D-alanine aminotransferase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q93Y32 2.83e-07 54 26 4 140 1 BCAT1 Branched-chain-amino-acid aminotransferase 1, mitochondrial Arabidopsis thaliana
Q9LE06 4.47e-07 53 24 8 261 1 BCAT4 Methionine aminotransferase BCAT4 Arabidopsis thaliana
P54694 4.36e-06 50 22 10 262 3 dat D-alanine aminotransferase Staphylococcus haemolyticus
K7QHS5 4.5e-06 50 29 0 91 1 BCAT2 Branched-chain amino acid aminotransferase 2, chloroplastic Humulus lupulus
O67733 6.13e-06 50 22 12 264 3 ilvE Probable branched-chain-amino-acid aminotransferase Aquifex aeolicus (strain VF5)
P54691 3.48e-05 48 28 0 103 3 ilvE Probable branched-chain-amino-acid aminotransferase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P0DJL9 3.74e-05 47 21 6 247 3 dat D-alanine aminotransferase Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
Q92B90 3.99e-05 47 23 6 247 3 dat D-alanine aminotransferase Listeria innocua serovar 6a (strain ATCC BAA-680 / CLIP 11262)
Q9M439 4.18e-05 48 26 5 133 1 BCAT2 Branched-chain-amino-acid aminotransferase 2, chloroplastic Arabidopsis thaliana
G2JZ74 4.29e-05 47 21 6 247 3 dat D-alanine aminotransferase Listeria monocytogenes serotype 1/2a (strain 10403S)
Q9M401 4.33e-05 48 21 10 269 1 BCAT3 Branched-chain-amino-acid aminotransferase 3, chloroplastic Arabidopsis thaliana
Q9FYA6 4.84e-05 47 24 3 141 1 BCAT5 Branched-chain-amino-acid aminotransferase 5, chloroplastic Arabidopsis thaliana
Q9LPM8 0.00021 45 26 4 126 5 BCAT7 Putative branched-chain-amino-acid aminotransferase 7 Arabidopsis thaliana
Q9LPM9 0.000387 45 26 4 130 1 BCAT6 Branched-chain-amino-acid aminotransferase 6 Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04240
Feature type CDS
Gene pabC
Product aminodeoxychorismate lyase
Location 953762 - 954589 (strand: 1)
Length 828 (nucleotides) / 275 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1962
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01063 Amino-transferase class IV

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0115 Amino acid transport and metabolism (E)
Coenzyme transport and metabolism (H)		 EH Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02619 4-amino-4-deoxychorismate lyase [EC:4.1.3.38] Folate biosynthesis
Biosynthesis of cofactors		 -

Protein Sequence

MYWVNGQQQQSINVSDRAVQFGDGCFTTLAVEQGKPILLSAHLKRLQRGCDALFLPSPDWQWLASHLLQIASTITEKSVIKVIISRGSGGRGYSSKGFDTPTVITSCSTYPFYYHNLQKQGVSLAISPVRLGQNSLLAGIKHLNRLEQVLIKHHLETTPFDDMLVCDNEGYLVEANAANLFWRKGNQLVTPDISLSGVNGIMRQQVLDFAQQLDWDIHIVREKPQTLYQADEIWLTNALMPIIPVKQIYFSDDKHYQYRDRDAYHVVLQHCLSLT

Flanking regions ( +/- flanking 50bp)

TTATCATGTACAAAAAATATCAATAACATAGATTATAAATAAGGTGTTTGATGTATTGGGTAAATGGACAACAGCAACAAAGCATCAATGTGAGTGATCGCGCGGTACAATTTGGTGATGGCTGTTTTACAACACTTGCCGTTGAACAAGGTAAACCTATTCTATTATCTGCTCACCTTAAGCGTTTACAACGCGGTTGTGATGCACTGTTTTTACCCTCACCAGACTGGCAATGGTTAGCCAGCCATCTTCTACAAATAGCGTCCACAATCACTGAAAAAAGTGTTATTAAGGTGATTATTAGCCGCGGAAGCGGTGGGCGAGGCTATTCATCGAAAGGCTTTGACACACCCACAGTGATCACATCCTGCTCAACTTACCCGTTTTATTATCATAACTTACAAAAGCAAGGGGTTTCTTTAGCCATTAGCCCAGTGAGATTGGGACAAAATAGTTTATTAGCCGGTATCAAGCATCTTAATCGCTTAGAGCAAGTGCTGATTAAACACCATTTAGAAACAACCCCATTTGATGACATGTTAGTGTGTGACAATGAAGGATATTTAGTTGAAGCGAATGCCGCAAACCTTTTCTGGCGTAAAGGAAATCAATTAGTTACCCCGGATATTAGTCTTTCGGGTGTGAATGGGATCATGCGCCAGCAGGTATTAGATTTTGCGCAACAATTGGACTGGGATATTCACATTGTGCGAGAAAAACCGCAAACGCTCTATCAAGCAGATGAAATTTGGTTAACCAATGCACTGATGCCCATTATTCCCGTAAAACAGATCTATTTTTCAGATGATAAGCACTATCAATATCGCGATAGAGACGCTTACCATGTTGTTTTACAACACTGTTTGTCACTGACTTAACGTTTGATGAGTTATAAATGAAGATAAAAAAATTAGTTTGGATAGCCTTT