Orthogroup:group_275


Homologs in group_275

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8 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08170 FBDBKF_08170 Morganella morganii S1 ilvE branched-chain amino acid transaminase
EHELCC_13355 EHELCC_13355 Morganella morganii S2 ilvE branched-chain-amino-acid transaminase
NLDBIP_13695 NLDBIP_13695 Morganella morganii S4 ilvE branched-chain amino acid transaminase
LHKJJB_12860 LHKJJB_12860 Morganella morganii S3 ilvE branched-chain amino acid transaminase
HKOGLL_12170 HKOGLL_12170 Morganella morganii S5 ilvE branched-chain amino acid transaminase
F4V73_RS18700 F4V73_RS18700 Morganella psychrotolerans - branched-chain amino acid transaminase
PMI_RS08325 PMI_RS08325 Proteus mirabilis HI4320 - D-amino-acid transaminase
PMI_RS16410 PMI_RS16410 Proteus mirabilis HI4320 - branched-chain amino acid transaminase

Distribution of group_275 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_275 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_275

Orthogroup content: 8 members

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This page summarizes the annotation of all members of the orthologous group group_275.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ilvE 5
2 - 3

Product

# Product Occurence
1 branched-chain amino acid transaminase 6
2 branched-chain-amino-acid transaminase 1
3 D-amino-acid transaminase 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0115 8 EH Amino acid transport and metabolism (E)
Coenzyme transport and metabolism (H)		 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00824 1 D-alanine transaminase [EC:2.6.1.21] Lysine degradation
Arginine and proline metabolism
Phenylalanine metabolism
D-Amino acid metabolism
Metabolic pathways
Microbial metabolism in diverse environments		 -
K00826 7 branched-chain amino acid aminotransferase [EC:2.6.1.42] Cysteine and methionine metabolism
Valine, leucine and isoleucine degradation
Valine, leucine and isoleucine biosynthesis
Pantothenate and CoA biosynthesis
Glucosinolate biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites
2-Oxocarboxylic acid metabolism
Biosynthesis of amino acids
Biosynthesis of cofactors		 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine
Leucine degradation, leucine => acetoacetate + acetyl-CoA
Pantothenate biosynthesis, valine/L-aspartate => pantothenate
Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01063 8 Amino-transferase class IV

Annotations of the 97 SwissProt hits

Annotation Number of occurrences
Aminodeoxychorismate lyase 4
Aminotransferase FGSG_00049 1
Aminotransferase TOXF 1
Aminotransferase apf4 1
Aminotransferase atnJ 1
Aminotransferase lcsP 1
Aminotransferase poxL 2
Bifunctional aminodeoxychorismate lyase / D-amino acid transaminase 1
Branched-chain amino acid aminotransferase 1, mitochondrial 1
Branched-chain amino acid aminotransferase 2, chloroplastic 1
Branched-chain amino acid aminotransferase gloG 1
Branched-chain-amino-acid aminotransferase 15
Branched-chain-amino-acid aminotransferase 1, mitochondrial 1
Branched-chain-amino-acid aminotransferase 2 1
Branched-chain-amino-acid aminotransferase 2, chloroplastic 1
Branched-chain-amino-acid aminotransferase 3, chloroplastic 1
Branched-chain-amino-acid aminotransferase 5, chloroplastic 1
Branched-chain-amino-acid aminotransferase 6 1
Branched-chain-amino-acid aminotransferase atnH 1
Branched-chain-amino-acid aminotransferase, cytosolic 6
Branched-chain-amino-acid aminotransferase, mitochondrial 7
Branched-chain-amino-acid aminotransferase-like protein 1 1
Branched-chain-amino-acid aminotransferase-like protein 2 1
Branched-chain-amino-acid transaminase 1 1
D-alanine aminotransferase 17
D-amino-acid transaminase, chloroplastic 1
Methionine aminotransferase BCAT4 1
Probable branched-chain-amino-acid aminotransferase 18
Putative branched-chain-amino-acid aminotransferase 3
Putative branched-chain-amino-acid aminotransferase 7 1
Transaminase AMT5 1
Transaminase AMT5-2 1
Transaminase htyB 1

Protein length

Min length 230
Max length 308
Mean length (sd) 295.4 (27.6)
Median length 308.0

Protein length distribution