PF01040


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF01040, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 21 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF01040
Description UbiA prenyltransferase family

Occurence in the database

PF01040 is associated with 21 different proteins (see tab "Protein list" and "Profile")
The 21 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1760 FBDBKF_12255 111748 112677 1 menA 1,4-dihydroxy-2-naphthoate polyprenyltransferase Morganella morganii S1
1 group_2101 FBDBKF_15820 13998 14882 -1 cyoE heme o synthase Morganella morganii S1
2 group_2420 FBDBKF_19535 13580 14434 1 ubiA 4-hydroxybenzoate octaprenyltransferase Morganella morganii S1
3 group_1760 EHELCC_14050 22028 22957 -1 menA 1,4-dihydroxy-2-naphthoate polyprenyltransferase Morganella morganii S2
4 group_2420 EHELCC_16480 13580 14434 1 ubiA 4-hydroxybenzoate octaprenyltransferase Morganella morganii S2
5 group_2101 EHELCC_18420 1437 2321 -1 cyoE heme o synthase Morganella morganii S2
6 group_1760 NLDBIP_15145 25965 26894 -1 menA 1,4-dihydroxy-2-naphthoate polyprenyltransferase Morganella morganii S4
7 group_2420 NLDBIP_16690 13580 14434 1 ubiA 4-hydroxybenzoate octaprenyltransferase Morganella morganii S4
8 group_2101 NLDBIP_17255 1437 2321 -1 cyoE heme o synthase Morganella morganii S4
9 group_1760 LHKJJB_15465 111748 112677 1 menA 1,4-dihydroxy-2-naphthoate polyprenyltransferase Morganella morganii S3
10 group_2420 LHKJJB_16780 54076 54930 -1 ubiA 4-hydroxybenzoate octaprenyltransferase Morganella morganii S3
11 group_2101 LHKJJB_17405 53867 54751 1 cyoE heme o synthase Morganella morganii S3
12 group_1760 HKOGLL_14585 98411 99340 1 menA 1,4-dihydroxy-2-naphthoate polyprenyltransferase Morganella morganii S5
13 group_2101 HKOGLL_16990 1437 2321 -1 cyoE heme o synthase Morganella morganii S5
14 group_2420 HKOGLL_18835 13580 14434 1 ubiA 4-hydroxybenzoate octaprenyltransferase Morganella morganii S5
15 group_2101 F4V73_RS16490 116794 117678 1 cyoE heme o synthase Morganella psychrotolerans
16 group_1760 F4V73_RS17085 45734 46663 1 1,4-dihydroxy-2-naphthoate polyprenyltransferase Morganella psychrotolerans
17 group_2420 F4V73_RS18590 57932 58786 -1 ubiA 4-hydroxybenzoate octaprenyltransferase Morganella psychrotolerans
18 group_2101 PMI_RS00500 130455 131339 -1 cyoE heme o synthase Proteus mirabilis HI4320
19 group_2420 PMI_RS13565 3009695 3010549 -1 ubiA 4-hydroxybenzoate octaprenyltransferase Proteus mirabilis HI4320
20 group_1760 PMI_RS15895 3528033 3528950 -1 1,4-dihydroxy-2-naphthoate polyprenyltransferase Proteus mirabilis HI4320