PF00988


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00988, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00988
Description Carbamoyl-phosphate synthase small chain, CPSase domain

Occurence in the database

PF00988 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1125 FBDBKF_06425 122884 124023 -1 carA carbamoyl phosphate synthase small subunit Morganella morganii S1
1 group_1125 EHELCC_09470 123456 124595 -1 carA carbamoyl phosphate synthase small subunit Morganella morganii S2
2 group_1125 NLDBIP_09850 123456 124595 -1 carA carbamoyl phosphate synthase small subunit Morganella morganii S4
3 group_1125 LHKJJB_07905 92643 93782 1 carA carbamoyl phosphate synthase small subunit Morganella morganii S3
4 group_1125 HKOGLL_07455 92643 93782 1 carA carbamoyl phosphate synthase small subunit Morganella morganii S5
5 group_1125 F4V73_RS15500 89771 90910 1 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit Morganella psychrotolerans
6 group_1125 PMI_RS00100 32136 33299 1 carA glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit Proteus mirabilis HI4320