PF00893


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00893, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 35 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00893
Description Small Multidrug Resistance protein

Occurence in the database

PF00893 is associated with 35 different proteins (see tab "Protein list" and "Profile")
The 35 proteins are classified into 6 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_644 FBDBKF_02115 113132 113521 1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Morganella morganii S1
1 group_645 FBDBKF_02120 113523 113855 1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Morganella morganii S1
2 group_686 FBDBKF_02650 227739 228059 -1 sugE quaternary ammonium compound efflux SMR transporter SugE Morganella morganii S1
3 group_992 FBDBKF_05495 109241 109573 -1 emrE Multidrug transporter EmrE and related cation transporters Morganella morganii S1
4 group_3632 FBDBKF_20535 123 470 -1 qacEdelta1 quaternary ammonium compound efflux SMR transporter QacE delta 1 Morganella morganii S1
5 group_644 EHELCC_02585 500952 501341 1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Morganella morganii S2
6 group_645 EHELCC_02590 501343 501675 1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Morganella morganii S2
7 group_686 EHELCC_03120 615559 615879 -1 sugE quaternary ammonium compound efflux SMR transporter SugE Morganella morganii S2
8 group_992 EHELCC_12095 71921 72253 1 emrE Multidrug transporter EmrE and related cation transporters Morganella morganii S2
9 group_3632 EHELCC_19885 123 470 -1 qacEdelta1 quaternary ammonium compound efflux SMR transporter QacE delta 1 Morganella morganii S2
10 group_686 NLDBIP_00340 64257 64577 1 sugE quaternary ammonium compound efflux SMR transporter SugE Morganella morganii S4
11 group_645 NLDBIP_00870 178461 178793 -1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Morganella morganii S4
12 group_644 NLDBIP_00875 178795 179184 -1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Morganella morganii S4
13 group_992 NLDBIP_12435 71876 72208 1 emrE Multidrug transporter EmrE and related cation transporters Morganella morganii S4
14 group_3632 NLDBIP_19870 2015 2362 1 qacEdelta1 quaternary ammonium compound efflux SMR transporter QacE delta 1 Morganella morganii S4
15 group_644 LHKJJB_01160 213501 213890 1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Morganella morganii S3
16 group_645 LHKJJB_01165 213892 214224 1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Morganella morganii S3
17 group_686 LHKJJB_01695 328108 328428 -1 sugE quaternary ammonium compound efflux SMR transporter SugE Morganella morganii S3
18 group_992 LHKJJB_12295 71921 72253 1 emrE Multidrug transporter EmrE and related cation transporters Morganella morganii S3
19 group_3632 LHKJJB_19835 2247 2594 1 qacEdelta1 quaternary ammonium compound efflux SMR transporter QacE delta 1 Morganella morganii S3
20 group_644 HKOGLL_01200 219012 219401 1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Morganella morganii S5
21 group_645 HKOGLL_01205 219403 219735 1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Morganella morganii S5
22 group_686 HKOGLL_01735 333619 333939 -1 sugE quaternary ammonium compound efflux SMR transporter SugE Morganella morganii S5
23 group_992 HKOGLL_10910 71921 72253 1 emrE Multidrug transporter EmrE and related cation transporters Morganella morganii S5
24 group_3632 HKOGLL_19685 123 470 -1 qacEdelta1 quaternary ammonium compound efflux SMR transporter QacE delta 1 Morganella morganii S5
25 group_992 F4V73_RS03800 805683 806015 1 SMR family transporter Morganella psychrotolerans
26 group_644 F4V73_RS04480 949344 949736 1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Morganella psychrotolerans
27 group_645 F4V73_RS04485 949738 950070 1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Morganella psychrotolerans
28 group_686 F4V73_RS05150 1099020 1099340 -1 sugE quaternary ammonium compound efflux SMR transporter SugE Morganella psychrotolerans
29 group_644 PMI_RS05590 1220632 1221072 1 mdtJ multidrug/spermidine efflux SMR transporter subunit MdtJ Proteus mirabilis HI4320
30 group_645 PMI_RS05595 1221074 1221406 1 mdtI multidrug/spermidine efflux SMR transporter subunit MdtI Proteus mirabilis HI4320
31 group_992 PMI_RS07340 1607872 1608204 -1 SMR family transporter Proteus mirabilis HI4320
32 group_3907 PMI_RS13355 2961494 2961820 -1 multidrug efflux SMR transporter Proteus mirabilis HI4320
33 group_3907 PMI_RS13360 2961911 2962318 -1 multidrug efflux SMR transporter Proteus mirabilis HI4320
34 group_686 PMI_RS17830 3916613 3916927 1 sugE quaternary ammonium compound efflux SMR transporter SugE Proteus mirabilis HI4320