PF00860


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00860, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 69 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00860
Description Permease family

Occurence in the database

PF00860 is associated with 69 different proteins (see tab "Protein list" and "Profile")
The 69 proteins are classified into 7 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_58 FBDBKF_00470 72085 73419 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S1
1 group_17 FBDBKF_04800 164088 165569 1 uraA Xanthine/uracil permease Morganella morganii S1
2 group_2670 FBDBKF_04845 175161 176522 -1 pbuX Xanthine/uracil permease Morganella morganii S1
3 group_69 FBDBKF_07665 45520 46887 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S1
4 group_58 FBDBKF_10820 132252 133586 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S1
5 group_2862 FBDBKF_11025 25887 27191 1 uraA uracil/xanthine transporter Morganella morganii S1
6 group_17 FBDBKF_12070 66341 67726 1 pbuX Xanthine/uracil permease Morganella morganii S1
7 group_3425 FBDBKF_13925 79936 81273 -1 uraA Xanthine/uracil permease Morganella morganii S1
8 group_17 FBDBKF_16205 29616 31016 1 pbuX Xanthine/uracil permease Morganella morganii S1
9 group_2197 FBDBKF_16555 40201 41490 1 uraA uracil permease Morganella morganii S1
10 group_69 FBDBKF_16995 28567 29913 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S1
11 group_58 EHELCC_01075 235449 236783 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S2
12 group_2862 EHELCC_05200 32277 33581 -1 uraA uracil/xanthine transporter Morganella morganii S2
13 group_17 EHELCC_06090 223545 225026 1 uraA Xanthine/uracil permease Morganella morganii S2
14 group_2670 EHELCC_06135 234618 235979 -1 pbuX Xanthine/uracil permease Morganella morganii S2
15 group_2197 EHELCC_08420 157187 158476 1 uraA uracil permease Morganella morganii S2
16 group_3425 EHELCC_11595 164812 166149 -1 uraA Xanthine/uracil permease Morganella morganii S2
17 group_69 EHELCC_13495 19714 21081 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S2
18 group_17 EHELCC_14235 66979 68364 -1 pbuX Xanthine/uracil permease Morganella morganii S2
19 group_17 EHELCC_16240 29616 31016 1 pbuX Xanthine/uracil permease Morganella morganii S2
20 group_69 EHELCC_16595 38597 39943 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S2
21 group_58 EHELCC_19410 3038 4372 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S2
22 group_58 NLDBIP_02385 443353 444687 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S4
23 group_2862 NLDBIP_05520 73342 74646 -1 uraA uracil/xanthine transporter Morganella morganii S4
24 group_17 NLDBIP_06410 264610 266091 1 uraA Xanthine/uracil permease Morganella morganii S4
25 group_2670 NLDBIP_06455 275683 277044 -1 pbuX Xanthine/uracil permease Morganella morganii S4
26 group_2197 NLDBIP_08745 157187 158476 1 uraA uracil permease Morganella morganii S4
27 group_3425 NLDBIP_11940 164812 166149 -1 uraA Xanthine/uracil permease Morganella morganii S4
28 group_69 NLDBIP_13940 40589 41956 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S4
29 group_58 NLDBIP_14985 132242 133576 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S4
30 group_17 NLDBIP_15330 70916 72301 -1 pbuX Xanthine/uracil permease Morganella morganii S4
31 group_69 NLDBIP_16805 38597 39943 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S4
32 group_17 NLDBIP_17100 31154 32554 -1 pbuX Xanthine/uracil permease Morganella morganii S4
33 group_2862 LHKJJB_02400 50866 52170 -1 uraA uracil/xanthine transporter Morganella morganii S3
34 group_17 LHKJJB_03290 242134 243615 1 uraA Xanthine/uracil permease Morganella morganii S3
35 group_2670 LHKJJB_03335 253207 254568 -1 pbuX Xanthine/uracil permease Morganella morganii S3
36 group_58 LHKJJB_03900 50594 51928 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S3
37 group_2197 LHKJJB_05520 98683 99972 -1 uraA uracil permease Morganella morganii S3
38 group_69 LHKJJB_08910 117793 119160 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S3
39 group_3425 LHKJJB_11800 164812 166149 -1 uraA Xanthine/uracil permease Morganella morganii S3
40 group_58 LHKJJB_14360 8150 9484 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S3
41 group_17 LHKJJB_15280 66341 67726 1 pbuX Xanthine/uracil permease Morganella morganii S3
42 group_69 LHKJJB_16665 28567 29913 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S3
43 group_17 LHKJJB_17020 34256 35656 -1 pbuX Xanthine/uracil permease Morganella morganii S3
44 group_58 HKOGLL_03145 235654 236988 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S5
45 group_2197 HKOGLL_05395 141778 143067 1 uraA uracil permease Morganella morganii S5
46 group_17 HKOGLL_06765 163998 165479 1 uraA Xanthine/uracil permease Morganella morganii S5
47 group_2670 HKOGLL_06810 175071 176432 -1 pbuX Xanthine/uracil permease Morganella morganii S5
48 group_69 HKOGLL_08460 117793 119160 1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S5
49 group_3425 HKOGLL_10410 164812 166149 -1 uraA Xanthine/uracil permease Morganella morganii S5
50 group_58 HKOGLL_12980 8150 9484 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S5
51 group_17 HKOGLL_14400 53004 54389 1 pbuX Xanthine/uracil permease Morganella morganii S5
52 group_2862 HKOGLL_15780 74306 75610 -1 uraA uracil/xanthine transporter Morganella morganii S5
53 group_17 HKOGLL_16820 29616 31016 1 pbuX Xanthine/uracil permease Morganella morganii S5
54 group_69 HKOGLL_17630 28567 29913 -1 nCS2 Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family Morganella morganii S5
55 group_2197 F4V73_RS03075 657389 658678 1 uraA uracil permease Morganella psychrotolerans
56 group_58 F4V73_RS06430 1341851 1343185 1 NCS2 family permease Morganella psychrotolerans
57 group_2862 F4V73_RS08205 1706275 1707579 -1 uracil/xanthine transporter Morganella psychrotolerans
58 group_17 F4V73_RS09270 1943720 1945201 1 nucleobase:cation symporter-2 family protein Morganella psychrotolerans
59 group_2670 F4V73_RS09295 1950651 1952012 -1 nucleobase:cation symporter-2 family protein Morganella psychrotolerans
60 group_69 F4V73_RS13435 321693 323060 1 NCS2 family permease Morganella psychrotolerans
61 group_58 F4V73_RS14505 129812 131149 1 NCS2 family permease Morganella psychrotolerans
62 group_17 F4V73_RS14575 146514 147899 -1 uracil-xanthine permease family protein Morganella psychrotolerans
63 group_17 F4V73_RS17400 110213 111613 -1 nucleobase:cation symporter-2 family protein Morganella psychrotolerans
64 group_69 F4V73_RS18455 26877 28223 -1 NCS2 family permease Morganella psychrotolerans
65 group_2197 PMI_RS07665 1672052 1673353 -1 uraA uracil permease Proteus mirabilis HI4320
66 group_17 PMI_RS14175 3147454 3148845 1 uracil-xanthine permease family protein Proteus mirabilis HI4320
67 group_58 PMI_RS14410 3197304 3198662 1 NCS2 family permease Proteus mirabilis HI4320
68 group_69 PMI_RS17515 3844515 3845861 1 NCS2 family permease Proteus mirabilis HI4320