PF00574
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00574, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains
within the database. 20 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.
Description
External link |
PF00574 |
Description |
Clp protease |
Occurence in the database
PF00574 is associated with 20 different proteins (see tab "Protein list" and "Profile") |
The 20 proteins are classified into 3 different orthogroup(s)
|
# |
Orthogroup |
Locus |
Start |
Stop |
S. |
Gene |
Product |
Organism |
0 |
group_364 |
FBDBKF_13105 |
12722 |
14752 |
-1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S1 |
1 |
group_2111 |
FBDBKF_15870 |
24660 |
25280 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S1 |
2 |
group_3582 |
FBDBKF_19405 |
11604 |
12455 |
-1 |
|
ATP-dependent Clp protease proteolytic subunit |
Morganella morganii S1 |
3 |
group_2111 |
EHELCC_18470 |
12099 |
12719 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S2 |
4 |
group_3582 |
EHELCC_19255 |
948 |
1799 |
1 |
|
ATP-dependent Clp protease proteolytic subunit |
Morganella morganii S2 |
5 |
group_364 |
EHELCC_19450 |
157 |
2187 |
-1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S2 |
6 |
group_2111 |
NLDBIP_17305 |
12099 |
12719 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S4 |
7 |
group_3582 |
NLDBIP_19385 |
948 |
1799 |
1 |
|
ATP-dependent Clp protease proteolytic subunit |
Morganella morganii S4 |
8 |
group_364 |
NLDBIP_19805 |
136 |
2172 |
1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S4 |
9 |
group_364 |
NLDBIP_19880 |
285 |
2315 |
-1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S4 |
10 |
group_2111 |
LHKJJB_17355 |
43469 |
44089 |
-1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S3 |
11 |
group_3582 |
LHKJJB_19420 |
11604 |
12455 |
-1 |
|
ATP-dependent Clp protease proteolytic subunit |
Morganella morganii S3 |
12 |
group_364 |
LHKJJB_19780 |
811 |
2847 |
-1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S3 |
13 |
group_364 |
LHKJJB_19845 |
136 |
2166 |
1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S3 |
14 |
group_364 |
HKOGLL_05965 |
245030 |
247060 |
1 |
|
ClpP-like prohead protease/major capsid protein fusion protein |
Morganella morganii S5 |
15 |
group_2111 |
HKOGLL_17040 |
12099 |
12719 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella morganii S5 |
16 |
group_3582 |
HKOGLL_19190 |
948 |
1799 |
1 |
|
ATP-dependent Clp protease proteolytic subunit |
Morganella morganii S5 |
17 |
group_364 |
F4V73_RS02100 |
450117 |
452099 |
1 |
|
Clp protease ClpP |
Morganella psychrotolerans |
18 |
group_2111 |
F4V73_RS16440 |
106354 |
106974 |
-1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Morganella psychrotolerans |
19 |
group_2111 |
PMI_RS00555 |
143003 |
143626 |
1 |
clpP |
ATP-dependent Clp endopeptidase proteolytic subunit ClpP |
Proteus mirabilis HI4320 |