PF00549


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00549, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00549
Description CoA-ligase

Occurence in the database

PF00549 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_326 FBDBKF_09805 55275 56147 -1 sucD succinate--CoA ligase subunit alpha Morganella morganii S1
1 group_1517 FBDBKF_09810 56147 57313 -1 sucC ADP-forming succinate--CoA ligase subunit beta Morganella morganii S1
2 group_326 EHELCC_04605 247240 248112 -1 sucD succinate--CoA ligase subunit alpha Morganella morganii S2
3 group_1517 EHELCC_04610 248112 249278 -1 sucC ADP-forming succinate--CoA ligase subunit beta Morganella morganii S2
4 group_326 NLDBIP_04605 247036 247908 -1 sucD succinate--CoA ligase subunit alpha Morganella morganii S4
5 group_1517 NLDBIP_04610 247908 249074 -1 sucC ADP-forming succinate--CoA ligase subunit beta Morganella morganii S4
6 group_1517 LHKJJB_14020 86304 87470 1 sucC ADP-forming succinate--CoA ligase subunit beta Morganella morganii S3
7 group_326 LHKJJB_14025 87470 88342 1 sucD succinate--CoA ligase subunit alpha Morganella morganii S3
8 group_326 HKOGLL_12510 56056 56928 -1 sucD succinate--CoA ligase subunit alpha Morganella morganii S5
9 group_1517 HKOGLL_12515 56928 58094 -1 sucC ADP-forming succinate--CoA ligase subunit beta Morganella morganii S5
10 group_1517 F4V73_RS00535 115209 116375 1 sucC ADP-forming succinate--CoA ligase subunit beta Morganella psychrotolerans
11 group_326 F4V73_RS00540 116375 117247 1 sucD succinate--CoA ligase subunit alpha Morganella psychrotolerans
12 group_1517 PMI_RS02810 617977 619143 1 sucC ADP-forming succinate--CoA ligase subunit beta Proteus mirabilis HI4320
13 group_326 PMI_RS02815 619143 620015 1 sucD succinate--CoA ligase subunit alpha Proteus mirabilis HI4320
14 group_326 PMI_RS10850 2389925 2391592 -1 acyl-CoA synthetase FdrA Proteus mirabilis HI4320