Homologs in group_326

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09805 FBDBKF_09805 95.9 Morganella morganii S1 sucD succinate--CoA ligase subunit alpha
EHELCC_04605 EHELCC_04605 95.9 Morganella morganii S2 sucD succinate--CoA ligase subunit alpha
NLDBIP_04605 NLDBIP_04605 95.9 Morganella morganii S4 sucD succinate--CoA ligase subunit alpha
LHKJJB_14025 LHKJJB_14025 95.9 Morganella morganii S3 sucD succinate--CoA ligase subunit alpha
HKOGLL_12510 HKOGLL_12510 95.9 Morganella morganii S5 sucD succinate--CoA ligase subunit alpha
F4V73_RS00540 F4V73_RS00540 94.5 Morganella psychrotolerans sucD succinate--CoA ligase subunit alpha
PMI_RS10850 PMI_RS10850 31.0 Proteus mirabilis HI4320 - acyl-CoA synthetase FdrA

Distribution of the homologs in the orthogroup group_326

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_326

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGE9 0.0 543 93 0 289 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Escherichia coli (strain K12)
P0AGF0 0.0 543 93 0 289 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGF1 0.0 543 93 0 289 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Escherichia coli O157:H7
Q51567 0.0 511 88 0 287 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45102 1.04e-174 487 83 0 289 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P53591 2.32e-159 448 76 1 285 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q1RH56 1.42e-145 413 70 1 290 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia bellii (strain RML369-C)
Q4ULQ8 7.67e-145 411 71 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
O08371 6.03e-142 404 69 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia prowazekii (strain Madrid E)
Q9AKE1 1.13e-140 400 68 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q92I22 1.88e-140 400 69 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q8LAD2 6.19e-134 385 67 2 291 1 At5g23250 Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial Arabidopsis thaliana
P68209 2.13e-133 384 66 2 291 1 At5g08300 Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial Arabidopsis thaliana
Q8GTQ9 4.34e-132 380 65 2 291 1 SCOA Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial Solanum lycopersicum
P80865 3.1e-131 377 63 0 290 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Bacillus subtilis (strain 168)
P99070 4.71e-129 372 65 0 284 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain N315)
P66866 4.71e-129 372 65 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HGI6 4.71e-129 372 65 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain COL)
Q8NX01 5.37e-129 371 65 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain MW2)
Q6G9W7 5.37e-129 371 65 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain MSSA476)
Q6GHI9 7.21e-129 371 65 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain MRSA252)
Q6ZL94 3.46e-128 370 65 2 291 1 Os07g0577700 Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Oryza sativa subsp. japonica
P36967 1.37e-126 366 68 2 291 1 scsA Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Dictyostelium discoideum
Q6DQL1 3.11e-126 366 67 2 282 1 None Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial Solanum lycopersicum
Q5HPU4 4.72e-126 364 63 0 281 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CPH4 8.16e-126 363 63 0 281 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
B3FHT4 7.05e-125 362 64 2 289 1 SCSa Succinate--CoA ligase [ADP-forming] subunit alpha Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII)
P13086 3.04e-120 351 67 2 294 2 Suclg1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Rattus norvegicus
Q9WUM5 6.05e-120 350 66 2 293 1 Suclg1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Mus musculus
Q9YGD2 4.79e-118 344 64 2 294 1 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (Fragment) Columba livia
P53595 3.64e-117 341 56 1 294 3 mtkB Malate--CoA ligase subunit alpha Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)
O28098 2.47e-115 336 56 1 288 3 sucD2 Succinate--CoA ligase [ADP-forming] subunit alpha 2 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P53596 1.6e-113 333 61 2 288 3 sucl-1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Caenorhabditis elegans
O28733 8.39e-113 330 54 1 289 3 sucD1 Succinate--CoA ligase [ADP-forming] subunit alpha 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O13750 2.46e-112 330 60 2 295 3 SPAC16E8.17c Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P53597 4.18e-112 330 65 2 293 1 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Homo sapiens
O67547 1.74e-111 327 61 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Aquifex aeolicus (strain VF5)
Q9P727 2.6e-111 328 60 2 289 3 tca-8 Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
O19069 4.96e-110 325 66 2 293 1 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Sus scrofa
Q58DR8 1.94e-109 323 65 2 293 2 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Bos taurus
Q94522 1.33e-108 320 61 2 285 2 Scsalpha1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Drosophila melanogaster
O26663 6.48e-103 305 53 2 286 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58643 5.91e-98 292 56 1 288 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P09143 2e-96 288 56 0 286 1 sucD Succinate--CoA ligase [GDP-forming] subunit alpha Thermus thermophilus
Q7U0Z0 2.29e-94 283 54 4 283 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WGC7 2.45e-94 283 54 4 283 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGC6 2.45e-94 283 54 4 283 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P53598 7.11e-92 278 51 4 298 1 LSC1 Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P53401 1.16e-87 266 55 4 286 1 ALPHA-SCS3 Succinate--CoA ligase [ADP-forming] subunit alpha-3, mitochondrial Trichomonas vaginalis
P53400 1.97e-87 266 54 4 286 1 ALPHA-SCS2 Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial Trichomonas vaginalis
P53399 4.05e-87 265 55 4 286 1 ALPHA-SCS1 Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial Trichomonas vaginalis
A0A3A6N9V6 3.77e-82 252 44 2 291 1 sqwL ADP-forming sulfoacetate-CoA ligase subunit SqwL Acholeplasma sp.
E5Y8P7 1.21e-72 228 42 2 292 1 sauD ADP-forming sulfoacetate-CoA ligase subunit SauD Bilophila wadsworthia (strain 3_1_6)
Q91V92 1.1e-27 115 36 9 262 1 Acly ATP-citrate synthase Mus musculus
P16638 1.38e-27 115 36 9 262 1 Acly ATP-citrate synthase Rattus norvegicus
P53396 2.27e-27 115 35 9 262 1 ACLY ATP-citrate synthase Homo sapiens
Q32PF2 1.04e-25 110 35 9 262 2 ACLY ATP-citrate synthase Bos taurus
Q2TCH3 1.46e-25 109 34 9 262 2 ACLY ATP-citrate synthase Ovis aries
O93988 3.01e-23 102 31 8 277 3 ACL1 ATP-citrate synthase subunit 1 Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
Q8X097 9.35e-23 101 31 8 277 3 B14D6.310 Probable ATP-citrate synthase subunit 1 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q9P7W3 4.94e-22 99 31 8 258 1 SPBC1703.07 Probable ATP-citrate synthase subunit 1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P53585 5.84e-22 99 30 6 261 3 acly-1 Probable ATP-citrate synthase Caenorhabditis elegans
Q54YA0 8.88e-22 98 29 4 268 1 acly Probable ATP-citrate synthase Dictyostelium discoideum
Q9C522 3.21e-19 90 32 3 213 2 ACLB-1 ATP-citrate synthase beta chain protein 1 Arabidopsis thaliana
Q9FGX1 2.95e-18 88 32 3 213 1 ACLB-2 ATP-citrate synthase beta chain protein 2 Arabidopsis thaliana
Q93VT8 1.26e-17 86 32 3 213 2 ACLB-1 ATP-citrate synthase beta chain protein 1 Oryza sativa subsp. japonica
E7FI45 3e-08 57 26 11 274 1 acdAI Acetate--CoA ligase [ADP-forming] I subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
A9A1Y1 2.29e-07 55 28 8 175 1 Nmar_0206 4-hydroxybutyrate--CoA ligase [ADP-forming] Nitrosopumilus maritimus (strain SCM1)
P77187 8.48e-06 50 27 3 148 4 yahF Uncharacterized protein YahF Escherichia coli (strain K12)
Q8U3D6 4.59e-05 48 25 10 210 1 acdAII Acetate--CoA ligase [ADP-forming] II subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS02815
Feature type CDS
Gene sucD
Product succinate--CoA ligase subunit alpha
Location 619143 - 620015 (strand: 1)
Length 873 (nucleotides) / 290 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_326
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00549 CoA-ligase
PF02629 CoA binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0074 Energy production and conversion (C) C Succinyl-CoA synthetase, alpha subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKGGTTHLGLPVFNTVREAVEATGATATVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDVGLGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGTAEEEAAAYIKDHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGDAVKSLLNK

Flanking regions ( +/- flanking 50bp)

AGCTTAACGGATGCCGCTAAACAAGTTGTTGCAGCAGCGGAGGCAAAATAATGTCTATTTTAATCGATAAAAACACTAAAGTTATTTGCCAAGGTTTCACTGGAAGCCAAGGAACTTTCCACTCCGAACAAGCTATTGCTTACGGTACTCAAATGGTGGGTGGTGTTACACCGGGTAAAGGTGGTACAACACATTTAGGCTTACCTGTATTTAATACTGTACGTGAAGCAGTGGAAGCAACGGGGGCGACGGCGACGGTTATTTATGTACCAGCACCATTTTGCAAAGACTCTATTTTAGAAGCTATTGATGCAGGTATTAAACTAATTATTACAATTACAGAAGGTATTCCTACGCTGGATATGCTGACTGTAAAAGTAAAATTAGATGAAGCTGGTGTTCGCATGATTGGCCCTAACTGTCCGGGTGTTATTACTCCAGGTGAGTGCAAAATTGGTATTATGCCTGGTCACATTCACTTACCTGGCAAAGTAGGTATTGTCTCTCGTTCAGGTACTTTAACTTATGAAGCAGTAAAACAAACTACTGACGTTGGTTTAGGTCAATCAACCTGTGTTGGTATCGGTGGTGACCCAATTCCGGGATCGAACTTTATTGATATTCTGAAGCTATTCCAAGAAGATCCGCAAACAGAAGCAATTGTTATGATTGGTGAAATTGGTGGTACAGCAGAAGAAGAAGCAGCTGCTTATATCAAAGATCACGTTACCAAACCTGTTGTAGGCTATATTGCTGGTGTTACAGCACCTAAAGGTAAGCGTATGGGGCATGCTGGCGCCATTATTGCGGGTGGTAAAGGAACTGCTGACGAGAAATTTGCCGCATTAGAAGCCGCTGGCGTTAAAACAGTACGTAGTTTAGCTGATATCGGTGATGCTGTTAAATCGCTATTAAATAAGTAACATTTTTGTTAATTGCTTCTAGTTAAAACTACATATCATGCCAATCTCTG