PF00485


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00485, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 22 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00485
Description Phosphoribulokinase / Uridine kinase family

Occurence in the database

PF00485 is associated with 22 different proteins (see tab "Protein list" and "Profile")
The 22 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_287 FBDBKF_06835 31504 32148 1 udk uridine kinase Morganella morganii S1
1 group_1696 FBDBKF_11835 17902 18777 1 prkB phosphoribulokinase Morganella morganii S1
2 group_2448 FBDBKF_20350 2564 3508 -1 coaA type I pantothenate kinase Morganella morganii S1
3 group_287 EHELCC_04135 154038 154682 -1 udk uridine kinase Morganella morganii S2
4 group_1696 EHELCC_14470 115928 116803 -1 prkB phosphoribulokinase Morganella morganii S2
5 group_2448 EHELCC_19690 2564 3508 -1 coaA type I pantothenate kinase Morganella morganii S2
6 group_287 NLDBIP_04135 153834 154478 -1 udk uridine kinase Morganella morganii S4
7 group_1696 NLDBIP_15565 119865 120740 -1 prkB phosphoribulokinase Morganella morganii S4
8 group_2448 NLDBIP_19665 1075 2019 1 coaA type I pantothenate kinase Morganella morganii S4
9 group_287 LHKJJB_09965 153948 154592 -1 udk uridine kinase Morganella morganii S3
10 group_1696 LHKJJB_15045 17902 18777 1 prkB phosphoribulokinase Morganella morganii S3
11 group_2448 LHKJJB_19635 2564 3508 -1 coaA type I pantothenate kinase Morganella morganii S3
12 group_287 HKOGLL_09010 36460 37104 1 udk uridine kinase Morganella morganii S5
13 group_1696 HKOGLL_14165 4565 5440 1 prkB phosphoribulokinase Morganella morganii S5
14 group_2448 HKOGLL_19545 1075 2019 1 coaA type I pantothenate kinase Morganella morganii S5
15 group_287 F4V73_RS00985 210166 210810 1 udk uridine kinase Morganella psychrotolerans
16 group_1696 F4V73_RS14815 198873 199748 -1 phosphoribulokinase Morganella psychrotolerans
17 group_2448 F4V73_RS18875 2567 3511 -1 coaA type I pantothenate kinase Morganella psychrotolerans
18 group_287 PMI_RS03195 705802 706443 1 udk uridine kinase Proteus mirabilis HI4320
19 group_287 PMI_RS04770 1049452 1049994 -1 hypothetical protein Proteus mirabilis HI4320
20 group_1696 PMI_RS13920 3092127 3092996 1 phosphoribulokinase Proteus mirabilis HI4320
21 group_2448 PMI_RS16100 3577966 3578913 -1 coaA type I pantothenate kinase Proteus mirabilis HI4320