Homologs in group_1696

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11835 FBDBKF_11835 81.3 Morganella morganii S1 prkB phosphoribulokinase
EHELCC_14470 EHELCC_14470 81.3 Morganella morganii S2 prkB phosphoribulokinase
NLDBIP_15565 NLDBIP_15565 81.3 Morganella morganii S4 prkB phosphoribulokinase
LHKJJB_15045 LHKJJB_15045 81.3 Morganella morganii S3 prkB phosphoribulokinase
HKOGLL_14165 HKOGLL_14165 81.3 Morganella morganii S5 prkB phosphoribulokinase
F4V73_RS14815 F4V73_RS14815 80.3 Morganella psychrotolerans - phosphoribulokinase

Distribution of the homologs in the orthogroup group_1696

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1696

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEX6 1.91e-178 496 80 0 288 3 prkB Probable phosphoribulokinase Shigella flexneri
P0AEX5 1.91e-178 496 80 0 288 3 prkB Probable phosphoribulokinase Escherichia coli (strain K12)
P19924 2.05e-122 354 57 1 288 1 cfxP Phosphoribulokinase, plasmid Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P19923 2.79e-121 351 57 1 288 1 cfxP Phosphoribulokinase, chromosomal Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P23015 1.43e-118 344 56 1 288 3 cbbP Phosphoribulokinase Xanthobacter flavus
P37100 2.11e-112 329 54 1 288 3 cbbP Phosphoribulokinase Nitrobacter vulgaris
P56887 7.33e-112 327 56 1 284 3 cbbP Phosphoribulokinase Sinorhizobium medicae (strain WSM419)
P58347 1.87e-111 326 56 1 283 3 cbbP Phosphoribulokinase Rhizobium meliloti (strain 1021)
P12033 4.74e-104 308 51 1 290 1 prkA Phosphoribulokinase 1 Cereibacter sphaeroides
P23010 2.9e-100 298 50 1 284 3 prkB Phosphoribulokinase 2 Cereibacter sphaeroides
P37101 5.42e-07 53 26 10 206 2 prk Phosphoribulokinase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P19824 2.39e-06 52 25 7 217 1 PRKA Phosphoribulokinase, chloroplastic Chlamydomonas reinhardtii
P09559 2.54e-05 48 24 9 244 1 None Phosphoribulokinase, chloroplastic Spinacia oleracea
P26302 7.99e-05 47 28 6 151 2 None Phosphoribulokinase, chloroplastic Triticum aestivum
P27774 0.000222 45 30 8 155 2 None Phosphoribulokinase, chloroplastic Mesembryanthemum crystallinum
C0ZAS6 0.00051 43 25 10 194 3 udk Uridine kinase Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599)
P25697 0.000807 44 28 8 173 1 At1g32060 Phosphoribulokinase, chloroplastic Arabidopsis thaliana

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS13920
Feature type CDS
Gene -
Product phosphoribulokinase
Location 3092127 - 3092996 (strand: 1)
Length 870 (nucleotides) / 289 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1696
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00485 Phosphoribulokinase / Uridine kinase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3954 Carbohydrate transport and metabolism (G) G Phosphoribulokinase

Kegg Ortholog Annotation(s)

Protein Sequence

MSIKHPIIAVTGSSGAGTTTTSQAFRKIFQQLNAHAASIEGDSFHRYTRPEMDMAIRKAKEQGRHISYFGPEANDFNLLSSTLSHYSQTGQGQFRKYLHSYDEATPYNQLPGTFTPWEALPEKTDILFYEGLHGGVVTDQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTTERGHSQEAVRDSVVRSMDDYISYIIPQFSRTHINFQRVPTVDTSNPFSAKAIPTLDESFIVIRFRGLTDIDFPYLLAMLHGSFMSTINTIVVPGGKLGLAMELIMAPLVKKLLNGEKIS

Flanking regions ( +/- flanking 50bp)

CATCACATTTAACAATAAGGTATAGCCCTTATTTTGAAAAGGAACATGATATGTCAATCAAACACCCTATTATTGCTGTTACTGGTTCAAGTGGTGCAGGTACTACTACAACCAGCCAAGCTTTTCGTAAAATATTTCAGCAACTCAACGCCCATGCAGCCTCTATTGAAGGGGATAGTTTTCACCGTTATACACGCCCTGAAATGGATATGGCCATTAGAAAAGCGAAAGAGCAAGGACGGCATATCAGCTATTTTGGCCCTGAAGCCAATGACTTTAATTTATTAAGTTCAACCCTAAGTCACTATAGCCAAACAGGGCAAGGGCAATTTCGCAAATATCTTCATTCTTATGATGAAGCAACCCCTTATAACCAATTACCCGGGACATTTACACCTTGGGAAGCATTGCCAGAAAAAACAGATATTTTATTTTATGAGGGATTGCATGGTGGAGTCGTTACCGATCAACATAATGTCGCTCAACACGTTGACCTATTAGTCGGTGTTGTGCCTATTGTTAACCTTGAATGGATACAAAAATTAATTAGAGACACCACAGAGCGCGGGCACTCTCAAGAAGCGGTGAGAGATTCTGTGGTACGTTCGATGGATGATTATATCAGTTACATCATTCCACAGTTTTCTCGCACTCATATCAATTTCCAACGCGTTCCTACGGTGGATACCTCTAATCCCTTCTCAGCTAAAGCTATTCCAACACTGGATGAAAGTTTTATTGTTATTCGCTTTCGTGGCTTAACGGATATCGATTTCCCCTATCTATTGGCAATGTTGCATGGTTCATTTATGTCGACTATCAATACTATTGTTGTTCCAGGAGGGAAATTAGGCTTAGCGATGGAATTAATCATGGCACCACTGGTGAAGAAATTATTGAATGGTGAAAAAATTAGCTAAAATAGATATGTTATTTGTGACGAAAATAATATCCCCGTATTTTAGGGATA