Homologs in group_1696

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11835 FBDBKF_11835 100.0 Morganella morganii S1 prkB phosphoribulokinase
NLDBIP_15565 NLDBIP_15565 100.0 Morganella morganii S4 prkB phosphoribulokinase
LHKJJB_15045 LHKJJB_15045 100.0 Morganella morganii S3 prkB phosphoribulokinase
HKOGLL_14165 HKOGLL_14165 100.0 Morganella morganii S5 prkB phosphoribulokinase
F4V73_RS14815 F4V73_RS14815 93.5 Morganella psychrotolerans - phosphoribulokinase
PMI_RS13920 PMI_RS13920 81.3 Proteus mirabilis HI4320 - phosphoribulokinase

Distribution of the homologs in the orthogroup group_1696

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1696

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AEX6 1.37e-172 481 78 0 288 3 prkB Probable phosphoribulokinase Shigella flexneri
P0AEX5 1.37e-172 481 78 0 288 3 prkB Probable phosphoribulokinase Escherichia coli (strain K12)
P19924 1.07e-120 350 57 1 288 1 cfxP Phosphoribulokinase, plasmid Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P19923 1.41e-117 342 56 1 288 1 cfxP Phosphoribulokinase, chromosomal Cupriavidus necator (strain ATCC 17699 / DSM 428 / KCTC 22496 / NCIMB 10442 / H16 / Stanier 337)
P37100 1.4e-110 324 54 1 288 3 cbbP Phosphoribulokinase Nitrobacter vulgaris
P23015 8.42e-108 317 54 1 288 3 cbbP Phosphoribulokinase Xanthobacter flavus
P56887 2.62e-104 308 53 1 287 3 cbbP Phosphoribulokinase Sinorhizobium medicae (strain WSM419)
P58347 6.63e-103 305 52 1 287 3 cbbP Phosphoribulokinase Rhizobium meliloti (strain 1021)
P12033 7.89e-100 297 50 1 289 1 prkA Phosphoribulokinase 1 Cereibacter sphaeroides
P23010 1.44e-94 284 49 1 285 3 prkB Phosphoribulokinase 2 Cereibacter sphaeroides
P09559 4.9e-06 51 24 10 250 1 None Phosphoribulokinase, chloroplastic Spinacia oleracea
P19824 8.33e-06 50 23 11 269 1 PRKA Phosphoribulokinase, chloroplastic Chlamydomonas reinhardtii
P37101 1.31e-05 49 25 9 208 2 prk Phosphoribulokinase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P27774 0.000511 44 22 11 275 2 None Phosphoribulokinase, chloroplastic Mesembryanthemum crystallinum

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_14470
Feature type CDS
Gene prkB
Product phosphoribulokinase
Location 115928 - 116803 (strand: -1)
Length 876 (nucleotides) / 291 (amino acids)

Contig

Accession ZDB_224
Length 134704 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1696
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00485 Phosphoribulokinase / Uridine kinase family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3954 Carbohydrate transport and metabolism (G) G Phosphoribulokinase

Kegg Ortholog Annotation(s)

Protein Sequence

MSRTHPIIAVTGSSGAGTTTTSQAFRKIFQQLDAVPAIIEGDSFHRYTRPEMDAAIRKAREQGRHISYFGPEANDFGLLESTFRQYSENGSGERRKYLHTYDEAVPYNQLPGTFTPREALPAGTDVLFYEGLHGGVVTPEHDIAGHVDLLVGVVPIVNLEWIQKLVRDTNDRGHSREAVMDSVVRSMDDYIRYITPQFSRTHINFQRVPTVDTSNPFSAKSIPSQDESFTVIRFRGLKKIDFPYLLSMLQGSFISASNTIVVPGGKLGLAMELIMAPLAEQLLQGKQINKR

Flanking regions ( +/- flanking 50bp)

TCATGCCGTCGGCGCAATTCCGCGGCTGATTCAGCCGGAGGAAACGCCGCATGTCACGGACCCACCCGATTATCGCCGTTACCGGCTCCAGCGGAGCCGGTACCACTACCACCAGTCAGGCTTTCCGTAAAATTTTCCAGCAACTGGATGCGGTTCCGGCCATTATTGAAGGTGACAGTTTCCACCGTTACACGCGGCCGGAAATGGATGCCGCCATCCGCAAGGCCCGCGAGCAGGGCCGCCACATCAGCTATTTCGGGCCCGAAGCCAACGATTTTGGCCTGCTCGAAAGCACATTCCGCCAGTACAGCGAAAACGGCAGCGGCGAGCGCCGCAAATACCTGCATACCTATGATGAAGCCGTGCCCTATAATCAGTTGCCCGGCACCTTCACCCCCCGCGAGGCACTTCCTGCCGGGACAGATGTGCTTTTCTATGAGGGATTACACGGCGGCGTGGTCACGCCGGAACATGATATTGCCGGACATGTGGATCTGCTGGTCGGCGTGGTACCGATAGTCAATCTGGAGTGGATACAGAAGTTAGTCCGTGACACCAATGATCGCGGCCATTCACGGGAGGCGGTAATGGATTCTGTCGTGCGTTCGATGGATGATTACATCCGCTATATCACCCCGCAGTTTTCCCGCACCCACATTAACTTCCAGCGGGTGCCGACGGTGGATACCTCAAACCCGTTCTCGGCCAAATCCATTCCGTCACAGGATGAAAGCTTTACCGTGATCCGCTTCCGCGGCCTGAAAAAAATCGATTTTCCCTATTTGTTATCCATGCTTCAGGGCTCCTTTATTTCCGCCTCAAATACCATCGTCGTCCCCGGCGGAAAATTAGGGCTGGCGATGGAATTAATAATGGCACCGCTGGCAGAGCAATTATTGCAGGGAAAACAAATAAACAAGCGATAAAAAAACCGGGTAATAATGTATTACCCGGTTTATTTTCAAAAATAAAAATA