PF00152


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00152, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 28 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00152
Description tRNA synthetases class II (D, K and N)

Occurence in the database

PF00152 is associated with 28 different proteins (see tab "Protein list" and "Profile")
The 28 proteins are classified into 4 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_631 FBDBKF_02040 96684 98453 1 aspS aspartate--tRNA ligase Morganella morganii S1
1 group_814 FBDBKF_04080 596 2113 -1 lysS lysine--tRNA ligase Morganella morganii S1
2 group_1247 FBDBKF_07260 130255 131655 -1 asnS asparagine--tRNA ligase Morganella morganii S1
3 group_2046 FBDBKF_15340 75895 76872 -1 epmA elongation factor P--(R)-beta-lysine ligase Morganella morganii S1
4 group_631 EHELCC_02510 484504 486273 1 aspS aspartate--tRNA ligase Morganella morganii S2
5 group_1247 EHELCC_03710 54531 55931 1 asnS asparagine--tRNA ligase Morganella morganii S2
6 group_814 EHELCC_05370 60053 61570 -1 lysS lysine--tRNA ligase Morganella morganii S2
7 group_2046 EHELCC_10905 8034 9011 1 epmA elongation factor P--(R)-beta-lysine ligase Morganella morganii S2
8 group_631 NLDBIP_00950 193863 195632 -1 aspS aspartate--tRNA ligase Morganella morganii S4
9 group_1247 NLDBIP_03710 54327 55727 1 asnS asparagine--tRNA ligase Morganella morganii S4
10 group_814 NLDBIP_05690 101118 102635 -1 lysS lysine--tRNA ligase Morganella morganii S4
11 group_2046 NLDBIP_11250 8034 9011 1 epmA elongation factor P--(R)-beta-lysine ligase Morganella morganii S4
12 group_631 LHKJJB_01085 197053 198822 1 aspS aspartate--tRNA ligase Morganella morganii S3
13 group_814 LHKJJB_02570 78642 80159 -1 lysS lysine--tRNA ligase Morganella morganii S3
14 group_1247 LHKJJB_09540 54441 55841 1 asnS asparagine--tRNA ligase Morganella morganii S3
15 group_2046 LHKJJB_11110 8034 9011 1 epmA elongation factor P--(R)-beta-lysine ligase Morganella morganii S3
16 group_631 HKOGLL_01125 202564 204333 1 aspS aspartate--tRNA ligase Morganella morganii S5
17 group_814 HKOGLL_06045 506 2023 -1 lysS lysine--tRNA ligase Morganella morganii S5
18 group_1247 HKOGLL_09435 135211 136611 -1 asnS asparagine--tRNA ligase Morganella morganii S5
19 group_2046 HKOGLL_09720 8034 9011 1 epmA elongation factor P--(R)-beta-lysine ligase Morganella morganii S5
20 group_1247 F4V73_RS01445 318292 319692 -1 asnS asparagine--tRNA ligase Morganella psychrotolerans
21 group_631 F4V73_RS04405 932503 934272 1 aspS aspartate--tRNA ligase Morganella psychrotolerans
22 group_814 F4V73_RS08520 1758583 1760100 -1 lysS lysine--tRNA ligase Morganella psychrotolerans
23 group_2046 F4V73_RS12115 8101 9078 1 epmA elongation factor P--(R)-beta-lysine ligase Morganella psychrotolerans
24 group_1247 PMI_RS03765 850182 851582 -1 asnS asparagine--tRNA ligase Proteus mirabilis HI4320
25 group_631 PMI_RS05390 1179763 1181547 1 aspS aspartate--tRNA ligase Proteus mirabilis HI4320
26 group_814 PMI_RS09900 2147151 2148665 -1 lysS lysine--tRNA ligase Proteus mirabilis HI4320
27 group_2046 PMI_RS17855 3921270 3922247 1 epmA elongation factor P--(R)-beta-lysine ligase Proteus mirabilis HI4320