Orthogroup:group_1305



Homologs in group_1305

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_07990 FBDBKF_07990 Morganella morganii S1 emrA Multidrug resistance efflux pump EmrA
EHELCC_13820 EHELCC_13820 Morganella morganii S2 emrA Multidrug resistance efflux pump EmrA
NLDBIP_14265 NLDBIP_14265 Morganella morganii S4 emrA Multidrug resistance efflux pump EmrA
LHKJJB_08585 LHKJJB_08585 Morganella morganii S3 emrA Multidrug resistance efflux pump EmrA
HKOGLL_08135 HKOGLL_08135 Morganella morganii S5 emrA Multidrug resistance efflux pump EmrA
F4V73_RS12995 F4V73_RS12995 Morganella psychrotolerans - HlyD family type I secretion periplasmic adaptor subunit
PMI_RS01345 PMI_RS01345 Proteus mirabilis HI4320 - HlyD family type I secretion periplasmic adaptor subunit

Distribution of group_1305 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1305 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1305

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1305.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 emrA 5
2 - 2

Product

# Product Occurence
1 Multidrug resistance efflux pump EmrA 5
2 HlyD family type I secretion periplasmic adaptor subunit 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1566 7 V Defense mechanisms (V) Multidrug resistance efflux pump EmrA

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K12537 7 membrane fusion protein, type I secretion system - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00529 1 Cation efflux system protein CusB domain 1
PF13437 6 HlyD family secretion protein
PF13533 6 Biotin-lipoyl like

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
Alkaline protease secretion protein AprE 1
Colicin V secretion protein CvaA 1
Hemolysin secretion protein D, chromosomal 1
Hemolysin secretion protein D, plasmid 1
Leukotoxin export protein LtxD 1
Leukotoxin secretion protein D 2
Proteases secretion protein PrtE 1
Protein CyaD 2
RTX-I toxin determinant D 1
RTX-III toxin determinant D 1
Type I secretion system membrane fusion protein PrsE 1

Protein length

Min length 435
Max length 441
Mean length (sd) 436.3 (2.4)
Median length 435.0

Protein length distribution