PF00140

Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Pfam domain PF00140
Protein list: lists the 21 occurences of the Pfam domain within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Pfam domain of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domain has been clustered.
Orthogroups are shown in red if they are annotated with that particular Pfam domain in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Pfam domain prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domain.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domain prediction.

Description

External link PF00140
Description Sigma-70 factor, region 1.2

Occurence in the database

PF00140 is associated with 21 different proteins
The 21 proteins are classified into 3 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_833 FBDBKF_03515 107558 108412 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S1
1 group_2317 FBDBKF_17530 40418 42268 1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S1
2 group_2383 FBDBKF_18965 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S1
3 group_833 EHELCC_07020 138691 139545 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S2
4 group_2317 EHELCC_17425 40418 42268 1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S2
5 group_2383 EHELCC_18710 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S2
6 group_833 NLDBIP_07345 138564 139418 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S4
7 group_2317 NLDBIP_17770 528 2378 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S4
8 group_2383 NLDBIP_18595 13425 14417 1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S4
9 group_833 LHKJJB_06880 102310 103164 1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S3
10 group_2317 LHKJJB_17690 526 2376 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S3
11 group_2383 LHKJJB_18580 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S3
12 group_833 HKOGLL_04050 130223 131077 -1 rpoH RNA polymerase sigma factor RpoH Morganella morganii S5
13 group_2317 HKOGLL_17700 526 2376 -1 rpoD RNA polymerase sigma factor RpoD Morganella morganii S5
14 group_2383 HKOGLL_18315 11096 12088 -1 rpoS RNA polymerase sigma factor RpoS Morganella morganii S5
15 group_833 F4V73_RS11385 419291 420145 1 rpoH RNA polymerase sigma factor RpoH Morganella psychrotolerans
16 group_2383 F4V73_RS13875 412519 413520 -1 rpoS RNA polymerase sigma factor RpoS Morganella psychrotolerans
17 group_2317 F4V73_RS16710 164268 166163 1 rpoD RNA polymerase sigma factor RpoD Morganella psychrotolerans
18 group_2383 PMI_RS11015 2425405 2426394 -1 rpoS RNA polymerase sigma factor RpoS Proteus mirabilis HI4320
19 group_2317 PMI_RS11730 2591863 2593719 1 rpoD RNA polymerase sigma factor RpoD Proteus mirabilis HI4320
20 group_833 PMI_RS17955 3946115 3946969 1 rpoH RNA polymerase sigma factor RpoH Proteus mirabilis HI4320