PF00085


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Pfam domains PF00085, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Pfam domains within the database. 15 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Pfam domain(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Pfam domains has been clustered.
In red the Pfam domains with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Pfam domains prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Pfam domains.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Pfam domains prediction.

Description

External link PF00085
Description Thioredoxin

Occurence in the database

PF00085 is associated with 15 different proteins (see tab "Protein list" and "Profile")
The 15 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1326 FBDBKF_08210 19482 19808 1 trxA thioredoxin TrxA Morganella morganii S1
1 group_1779 FBDBKF_12975 95332 96189 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S1
2 group_1779 EHELCC_06290 265364 266221 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S2
3 group_1326 EHELCC_13315 143917 144243 -1 trxA thioredoxin TrxA Morganella morganii S2
4 group_1779 NLDBIP_06610 306429 307286 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S4
5 group_1326 NLDBIP_13655 143917 144243 -1 trxA thioredoxin TrxA Morganella morganii S4
6 group_1779 LHKJJB_03490 283953 284810 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S3
7 group_1326 LHKJJB_12900 18200 18526 1 trxA thioredoxin TrxA Morganella morganii S3
8 group_1779 HKOGLL_06965 205817 206674 1 cnoX Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family Morganella morganii S5
9 group_1326 HKOGLL_12130 143917 144243 -1 trxA thioredoxin TrxA Morganella morganii S5
10 group_1779 F4V73_RS16160 35334 36200 1 co-chaperone YbbN Morganella psychrotolerans
11 group_1326 F4V73_RS18760 20636 20962 1 trxA thioredoxin TrxA Morganella psychrotolerans
12 group_4371 PMI_RS03730 840926 841318 1 thioredoxin family protein Proteus mirabilis HI4320
13 group_1779 PMI_RS10690 2350476 2351333 1 co-chaperone YbbN Proteus mirabilis HI4320
14 group_1326 PMI_RS16470 3632554 3632880 1 trxA thioredoxin TrxA Proteus mirabilis HI4320