K00600


Help to interpret the results

Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected Kegg Ortholog K00600
Protein list: lists the 7 occurences of the Kegg Ortholog within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the Kegg Ortholog of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Ortholog has been clustered.
Orthogroups are shown in red if they are annotated with that particular Kegg Ortholog in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and Kegg Ortholog prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Ortholog.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Ortholog prediction.

Description

External link K00600
KO K00600
Description glycine hydroxymethyltransferase [EC:2.1.2.1]

KO part of 13 pathways

Glycine, serine and threonine metabolism
Cyanoamino acid metabolism
Glyoxylate and dicarboxylate metabolism
One carbon pool by folate
Methane metabolism
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism
Biosynthesis of amino acids
Biosynthesis of cofactors
Antifolate resistance
Folate transport and metabolism

KO part of 5 modules

M00140 Cofactor and vitamin metabolism C1-unit interconversion, prokaryotes
M00141 Cofactor and vitamin metabolism C1-unit interconversion, eukaryotes
M00346 Methane metabolism Formaldehyde assimilation, serine pathway
M00532 Other carbohydrate metabolism Photorespiration
M00975 Serine and threonine metabolism Betaine degradation, bacteria, betaine => pyruvate

Occurence in the database

K00600 is associated with 7 different proteins
The 7 proteins are classified into 1 different orthogroup(s)
Orthogroup Locus Start Stop S. Gene Product Organism
0 group_608 FBDBKF_01160 215535 216788 -1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S1
1 group_608 EHELCC_00385 92080 93333 1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S2
2 group_608 NLDBIP_03075 586803 588056 -1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S4
3 group_608 LHKJJB_04590 194044 195297 -1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S3
4 group_608 HKOGLL_02455 92285 93538 1 glyA Glycine/serine hydroxymethyltransferase Morganella morganii S5
5 group_608 F4V73_RS07235 1504593 1505846 -1 glyA serine hydroxymethyltransferase Morganella psychrotolerans
6 group_608 PMI_RS09215 2007901 2009154 -1 glyA serine hydroxymethyltransferase Proteus mirabilis HI4320