Orthogroup:group_608


Homologs in group_608

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01910 FBDBKF_01910 Morganella morganii S1 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
EHELCC_02380 EHELCC_02380 Morganella morganii S2 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
NLDBIP_01080 NLDBIP_01080 Morganella morganii S4 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
LHKJJB_00955 LHKJJB_00955 Morganella morganii S3 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
HKOGLL_00995 HKOGLL_00995 Morganella morganii S5 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
F4V73_RS04255 F4V73_RS04255 Morganella psychrotolerans ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
PMI_RS05250 PMI_RS05250 Proteus mirabilis HI4320 ispE 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase

Distribution of group_608 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_608 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_608

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_608.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 ispE 7

Product

# Product Occurence
1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1947 7 I Lipid transport and metabolism (I) 4-diphosphocytidyl-2C-methyl-D-erythritol kinase

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K00919 7 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148] Terpenoid backbone biosynthesis
Metabolic pathways
Biosynthesis of secondary metabolites		 C5 isoprenoid biosynthesis, non-mevalonate pathway

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00288 7 GHMP kinases N terminal domain
PF08544 7 GHMP kinases C terminal

Annotations of the 515 SwissProt hits

Annotation Number of occurrences
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 486
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic 3
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) 1
Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 25

Protein length

Min length 291
Max length 292
Mean length (sd) 291.1 (0.4)
Median length 291.0

Protein length distribution