K00245


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected Kegg Orthologs K00245, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the Kegg Orthologs within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the Kegg Ortholog(s) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported Kegg Orthologs has been clustered.
In red the Kegg Orthologs with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and Kegg Orthologs prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered Kegg Orthologs.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or Kegg Orthologs prediction.

Description

External link K00245
KO K00245
Description succinate dehydrogenase iron-sulfur subunit [EC:1.3.5.1]

KO part of 10 pathways

Citrate cycle (TCA cycle)
Oxidative phosphorylation
Pyruvate metabolism
Butanoate metabolism
Carbon fixation pathways in prokaryotes
Metabolic pathways
Biosynthesis of secondary metabolites
Microbial metabolism in diverse environments
Carbon metabolism
Two-component system

KO part of 3 modules

M00009 Central carbohydrate metabolism Citrate cycle (TCA cycle, Krebs cycle)
M00011 Central carbohydrate metabolism Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
M00150 ATP synthesis Fumarate reductase, prokaryotes

Occurence in the database

K00245 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_779 PMI_RS17845 3917784 3918521 -1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit Proteus mirabilis HI4320
1 group_779 FBDBKF_03605 127495 128229 1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S1
2 group_779 EHELCC_06930 118874 119608 -1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S2
3 group_779 NLDBIP_07255 118747 119481 -1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S4
4 group_779 LHKJJB_06790 82493 83227 -1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S3
5 group_779 HKOGLL_04140 150160 150894 1 frdB succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella morganii S5
6 group_779 F4V73_RS11265 392561 393295 -1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit Morganella psychrotolerans