Help to interpret the results
Four outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected GI cluster GIC1
GIs list: lists the 6 occurences of the GI cluster within the database. The table reports information on each occurence.
Orthogroup list: lists the 19 orthogroups associated with the GI cluster
Profile: phylogenetic tree annotated with
- the presence of the GI cluster of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) associated with the GI cluster in each genome.
Orthogroups are shown in red if they are found withinin the that particular GI cluster in a given genome , in green otherwise, i.e. if the orthogroup is present in the genome but not in that GI cluster.
Green homologs (same orthogroup) are not found inside the considered GI cluster.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or GI cluster prediction.
Description
| Cluster ID | GIC1 |
|---|---|
| Length | 11874 |
Genes in magenta are AMR genes, while purple correspond to VF genes.
Links are coloured wiht a scale of gray reflecting the sequence identity: dark gray for highly conserved, light grey for features with less identity. Click on the link to visualise the percentage of identity. Beginning and end of the regions are shown as dashed line if the region shows a complete circular contig, a double line if the start or end of the region matches the start or end of a linear contig and a single line otherwise.
Genomic regions
| ID | Organism | Bioentry | Start | End | Length | |
|---|---|---|---|---|---|---|
| 11 | GI11 | Morganella morganii S4 | ZDB_525 | 176549 | 187458 | 10909 |
| 13 | GI13 | Morganella morganii S2 | ZDB_219 | 202462 | 209187 | 6725 |
| 42 | GI42 | Morganella morganii S3 | ZDB_367 | 1751 | 12969 | 11218 |
| 61 | GI61 | Proteus mirabilis HI4320 | NC_010554 | 2871295 | 2891872 | 20577 |
| 85 | GI85 | Morganella morganii S5 | ZDB_697 | 4079 | 14987 | 10908 |
| 86 | GI86 | Morganella morganii S1 | contig_43 | 4510 | 15418 | 10908 |
| Orthogroup | Products | Genes | |
|---|---|---|---|
| 130 | group_130 | parA (10) | ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ (5) Chromosome partitioning protein ParA (5) ParA family protein (1) |
| 282 | group_282 | lemA (5) | Magnetosome formation protein MamQ, lipoprotein antigen LemA family (5) LemA family protein (3) |
| 3104 | group_3104 | - | hypothetical protein (6) |
| 3105 | group_3105 | parB (5) | Chromosome partitioning protein ParB (5) hypothetical protein (1) |
| 3106 | group_3106 | - | DUF2857 domain-containing protein (6) |
| 3107 | group_3107 | - | Transposase (5) hypothetical protein (1) |
| 3108 | group_3108 | - | STY4528 family pathogenicity island replication protein (6) |
| 3109 | group_3109 | dfsB (5) | DUF1706 domain-containing protein (5) ClbS/DfsB family four-helix bundle protein (1) |
| 3110 | group_3110 | - | TIGR03761 family integrating conjugative element protein (6) |
| 3111 | group_3111 | - | Lipoprotein (5) hypothetical protein (1) |
| 2464 | group_2464 | topB (6) | DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains (5) DNA topoisomerase III (1) type IA DNA topoisomerase (1) |
| 2465 | group_2465 | rpnC (5) | Recombination-promoting DNA endonuclease RpnC/YadD (5) Rpn family recombination-promoting nuclease/putative transposase (2) |
| 3112 | group_3112 | - | STY4534 family ICE replication protein (6) |
| 3113 | group_3113 | - | Integrating conjugative element protein, PFL_4693 family (5) exported protein (1) |
| 83 | group_83 | ygcG (10) | Uncharacterized membrane protein YgcG, contains a TPM-fold domain (10) TPM domain-containing protein (2) |
| 100 | group_100 | dnaB-PI (11) | SPI-7-type island replicative DNA helicase (11) |
| 4207 | group_4207 | - | integrase (1) |
| 4085 | group_4085 | - | DUF1449 family protein (1) |
| 4857 | group_4857 | - | hypothetical protein (1) |
