COG4570


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4570, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 11 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Holliday junction resolvase RusA (prophage-encoded endonuclease)
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG4570 is associated with 11 different proteins (see tab "Protein list" and "Profile")
The 11 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_3378 FBDBKF_12370 2935 3342 -1 rusA Crossover junction endodeoxyribonuclease RusA Morganella morganii S1
1 group_3065 FBDBKF_18510 23967 24362 -1 rusA RusA family crossover junction endodeoxyribonuclease Morganella morganii S1
2 group_3065 EHELCC_01875 363479 363874 1 rusA RusA family crossover junction endodeoxyribonuclease Morganella morganii S2
3 group_3378 EHELCC_19125 3114 3521 -1 rusA Crossover junction endodeoxyribonuclease RusA Morganella morganii S2
4 group_3065 NLDBIP_01585 316262 316657 -1 rusA RusA family crossover junction endodeoxyribonuclease Morganella morganii S4
5 group_3378 NLDBIP_19095 9053 9460 -1 rusA Crossover junction endodeoxyribonuclease RusA Morganella morganii S4
6 group_3065 LHKJJB_00450 76028 76423 1 rusA RusA family crossover junction endodeoxyribonuclease Morganella morganii S3
7 group_3378 LHKJJB_18985 9053 9460 -1 rusA Crossover junction endodeoxyribonuclease RusA Morganella morganii S3
8 group_3065 HKOGLL_00490 81539 81934 1 rusA RusA family crossover junction endodeoxyribonuclease Morganella morganii S5
9 group_3378 F4V73_RS06185 1301792 1302163 -1 RusA family crossover junction endodeoxyribonuclease Morganella psychrotolerans
10 group_3065 PMI_RS02415 541348 541704 1 RusA family crossover junction endodeoxyribonuclease Proteus mirabilis HI4320