COG4168


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG4168, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type antimicrobial peptide export system, permease component SapB
Function(s) descr. Defense mechanisms (V)

Occurence in the database

COG4168 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1007 FBDBKF_05625 132660 133625 1 sapB putrescine export ABC transporter permease SapB Morganella morganii S1
1 group_1007 EHELCC_11965 47869 48834 -1 sapB putrescine export ABC transporter permease SapB Morganella morganii S2
2 group_1007 NLDBIP_12305 47824 48789 -1 sapB putrescine export ABC transporter permease SapB Morganella morganii S4
3 group_1007 LHKJJB_12165 47869 48834 -1 sapB putrescine export ABC transporter permease SapB Morganella morganii S3
4 group_1007 HKOGLL_10780 47869 48834 -1 sapB putrescine export ABC transporter permease SapB Morganella morganii S5
5 group_1007 F4V73_RS03680 781334 782299 -1 sapB putrescine export ABC transporter permease SapB Morganella psychrotolerans
6 group_1007 PMI_RS06660 1457615 1458580 1 sapB putrescine export ABC transporter permease SapB Proteus mirabilis HI4320