Orthogroup:group_3686


Homologs in group_3686

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4 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
F4V73_RS00095 F4V73_RS00095 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS07025 F4V73_RS07025 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS09365 F4V73_RS09365 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit
F4V73_RS16870 F4V73_RS16870 Morganella psychrotolerans tssB type VI secretion system contractile sheath small subunit

Distribution of group_3686 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_3686 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_3686

Orthogroup content: 4 members

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This page summarizes the annotation of all members of the orthologous group group_3686.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 tssB 4

Product

# Product Occurence
1 type VI secretion system contractile sheath small subunit 4

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3516 4 U Intracellular trafficking, secretion, and vesicular transport (U) Predicted component TssA of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K11901 4 type VI secretion system protein ImpB Biofilm formation - Pseudomonas aeruginosa -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF05591 4 Type VI secretion system, VipA, VC_A0107 or Hcp2

Virulence factor Annotation(s)

VF gene ID Occurences Protein VF ID Category
VFG041072 1 type VI secretion system contractile sheath small subunit VF1036 Effector delivery system
VFG041204 1 type VI secretion system contractile sheath small subunit VF1263 Effector delivery system
VFG048624 1 type VI secretion system contractile sheath small subunit VipA VF0569 Effector delivery system

Annotations of the 1 SwissProt hits

Annotation Number of occurrences
Type VI secretion system sheath protein TssB1 1

Protein length

Min length 165
Max length 185
Mean length (sd) 174.0 (8.9)
Median length 173.0

Protein length distribution