COG2890


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2890, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Methylase of polypeptide chain release factors
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG2890 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_612 FBDBKF_01930 73539 74375 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S1
1 group_1928 FBDBKF_14345 68896 69825 -1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Morganella morganii S1
2 group_612 EHELCC_02400 461359 462195 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S2
3 group_1928 EHELCC_07935 47160 48089 1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Morganella morganii S2
4 group_612 NLDBIP_01060 217941 218777 -1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S4
5 group_1928 NLDBIP_08260 47160 48089 1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Morganella morganii S4
6 group_612 LHKJJB_00975 173908 174744 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S3
7 group_1928 LHKJJB_06005 209070 209999 -1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Morganella morganii S3
8 group_612 HKOGLL_01015 179419 180255 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella morganii S5
9 group_1928 HKOGLL_04910 31751 32680 1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Morganella morganii S5
10 group_1928 F4V73_RS02560 540766 541695 1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Morganella psychrotolerans
11 group_612 F4V73_RS04275 903780 904616 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Morganella psychrotolerans
12 group_612 PMI_RS05270 1151628 1152476 1 prmC peptide chain release factor N(5)-glutamine methyltransferase Proteus mirabilis HI4320
13 group_1928 PMI_RS08840 1933105 1934037 -1 prmB 50S ribosomal protein L3 N(5)-glutamine methyltransferase Proteus mirabilis HI4320