Homologs in group_748

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_03330 FBDBKF_03330 84.9 Morganella morganii S1 rng ribonuclease G
EHELCC_07205 EHELCC_07205 84.9 Morganella morganii S2 rng ribonuclease G
NLDBIP_07530 NLDBIP_07530 84.9 Morganella morganii S4 rng ribonuclease G
LHKJJB_07065 LHKJJB_07065 84.9 Morganella morganii S3 rng ribonuclease G
HKOGLL_03865 HKOGLL_03865 84.9 Morganella morganii S5 rng ribonuclease G
F4V73_RS11605 F4V73_RS11605 84.7 Morganella psychrotolerans rng ribonuclease G

Distribution of the homologs in the orthogroup group_748

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_748

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0A9J3 0.0 844 84 0 489 3 rng Ribonuclease G Shigella flexneri
P0A9J0 0.0 844 84 0 489 1 rng Ribonuclease G Escherichia coli (strain K12)
P0A9J1 0.0 844 84 0 489 3 rng Ribonuclease G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0A9J2 0.0 844 84 0 489 3 rng Ribonuclease G Escherichia coli O157:H7
A0A0H3NGK0 0.0 842 84 0 489 1 rng Ribonuclease G Salmonella typhimurium (strain SL1344)
P45175 0.0 711 71 1 487 3 rng Ribonuclease G Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P71905 1.76e-89 296 38 5 421 1 rne Ribonuclease E Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A0R152 5.22e-88 293 38 5 411 1 rne Ribonuclease E Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
Q8YP69 9.09e-82 270 38 3 379 1 rne Ribonuclease E Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
P21513 2.56e-79 270 36 6 429 1 rne Ribonuclease E Escherichia coli (strain K12)
P44443 1.12e-78 266 38 6 420 3 rne Ribonuclease E Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8K9J9 6.18e-78 265 36 5 431 3 rne Ribonuclease E Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P72656 7.99e-76 254 37 4 380 1 rne Ribonuclease E Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q89AH3 7.46e-75 244 37 7 395 3 rne Putative ribonuclease E Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P57429 2.63e-73 251 35 5 429 3 rne Ribonuclease E Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q1XDS6 1.02e-70 236 35 3 371 3 rne Ribonuclease E/G-like protein Neopyropia yezoensis
P51211 1.51e-69 233 35 3 371 3 rne Ribonuclease E/G-like protein Porphyra purpurea
F4IV66 7.62e-58 209 34 8 375 1 RNE Ribonuclease E/G-like protein, chloroplastic Arabidopsis thaliana
O78453 1.43e-20 97 24 11 383 3 rne Ribonuclease E/G-like protein Guillardia theta
Q9TL10 1.25e-06 54 33 3 128 3 rne Ribonuclease E/G-like protein Nephroselmis olivacea
Q8TY07 2.41e-06 53 33 3 121 3 fau-1 Probable ribonuclease FAU-1 Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS18085
Feature type CDS
Gene rng
Product ribonuclease G
Location 3971790 - 3973259 (strand: 1)
Length 1470 (nucleotides) / 489 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_748
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF10150 Ribonuclease E/G family
PF20833 RNase E/G, Thioredoxin-like domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1530 Translation, ribosomal structure and biogenesis (J) J Ribonuclease G or E

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08301 ribonuclease G [EC:3.1.26.-] - -

Protein Sequence

MTAELLVNVTPSETRVAYISGGILQEIHVEREAKRGLVGNIYKGRVSRVLPGMQAAFIDIGLEKAAFLHASDIMPHTECIAGEEQKKFNVRDIAQLVHQGQDLIVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESEEERERLKRLVEEYCDENGGFIIRTAAEGVGEHEIKQDAAFLKRLWNKIIERKKRNKTRIQIYGELALAQRILRDFAGAELDSIRVDSKLTYHQLQEFIGEYIPELTAKLELHQGNQPIFDLYGVESEIQRALERKVELKSGGYLIIDQTEAMTTIDINTGAFVGHRNLEETIFNTNVEASQAIARQLRLRNLGGIIIIDFIDMSNEDHRRRVLASLEQALSKDRVKTTINGFSQLGLVEMTRKRTRESLEHVLCDDCPTCQGRGTVKSVETVCYEILREIVRVHKTIDADRFLVYAAPAVVEALKGDESHALAEVEIFVGKQVKVQTELLYSQEQFDVVMM

Flanking regions ( +/- flanking 50bp)

GAAGCATTGATAGCTCAATTTTTGTCTCTAGCGAATGATAAGGAGATTTCATGACAGCAGAGCTATTAGTGAATGTGACTCCCTCTGAAACCCGAGTGGCCTATATCAGCGGGGGCATACTACAAGAGATCCACGTTGAAAGAGAAGCCAAACGAGGTCTTGTCGGAAACATCTACAAAGGTCGGGTAAGTCGTGTATTACCTGGGATGCAAGCTGCATTTATTGACATTGGGCTTGAGAAAGCCGCTTTTTTACATGCTTCTGATATTATGCCTCACACGGAATGTATCGCGGGTGAAGAGCAGAAAAAATTTAATGTTCGTGATATTGCGCAACTTGTACATCAAGGTCAGGACTTGATTGTACAAGTGGTGAAAGATCCTCTAGGTACAAAAGGGGCACGTCTTACAACAGATATCACATTACCATCACGTTACTTGGTGTTTATGCCGGGGGCTTCTCATGTGGGTGTTTCACAACGTATTGAAAGTGAAGAAGAACGTGAGCGCTTAAAACGCTTGGTAGAAGAGTATTGTGATGAAAATGGCGGGTTTATTATTCGCACTGCCGCTGAAGGTGTCGGCGAACATGAAATAAAACAAGATGCTGCTTTTTTAAAGCGCCTATGGAATAAAATCATTGAGCGTAAAAAAAGAAATAAAACGCGTATTCAAATTTATGGTGAGCTCGCTTTAGCACAACGTATTTTACGTGATTTTGCAGGGGCTGAATTAGATAGCATTCGGGTTGACTCTAAATTAACTTATCATCAATTACAGGAGTTTATTGGTGAATATATTCCTGAATTAACCGCTAAACTTGAATTACACCAAGGTAATCAACCTATTTTCGATCTCTACGGGGTTGAAAGTGAAATTCAGCGCGCGTTAGAGCGAAAGGTCGAGTTAAAATCAGGAGGCTATCTGATTATCGACCAAACCGAAGCAATGACAACGATTGATATCAATACGGGCGCTTTTGTTGGTCATCGTAATTTAGAAGAGACGATTTTTAATACCAATGTTGAGGCGAGTCAGGCGATAGCGCGGCAACTGAGATTACGTAATTTAGGCGGCATTATCATTATTGATTTTATTGATATGAGTAATGAAGATCATCGCCGTAGAGTATTAGCTTCCTTAGAACAAGCATTGAGCAAAGATCGCGTGAAAACGACCATCAATGGTTTTTCACAATTAGGTTTGGTTGAGATGACACGTAAACGAACCCGTGAAAGTCTCGAGCATGTACTTTGTGATGACTGTCCTACTTGCCAAGGCCGTGGTACAGTAAAATCAGTTGAAACGGTATGTTATGAAATATTACGAGAAATTGTTCGTGTTCATAAAACCATAGACGCAGATCGCTTTTTGGTTTATGCCGCCCCCGCTGTTGTGGAAGCACTAAAAGGTGATGAATCACATGCTTTAGCCGAAGTGGAAATTTTTGTTGGGAAGCAAGTCAAAGTGCAAACTGAGCTACTCTATAGTCAGGAGCAGTTTGATGTGGTGATGATGTAATGGATTCGCCTTGCTAATAAATATGATGGCAGAAAGGAGACTAAATGAAG