COG1171


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1171, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 20 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Threonine deaminase
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG1171 is associated with 20 different proteins (see tab "Protein list" and "Profile")
The 20 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_2765 FBDBKF_07765 73002 74204 -1 dpaL diaminopropionate ammonia-lyase Morganella morganii S1
1 group_1321 FBDBKF_08180 10140 11708 1 ilvA threonine ammonia-lyase, biosynthetic Morganella morganii S1
2 group_2092 FBDBKF_15745 462 1448 1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB Morganella morganii S1
3 group_1321 EHELCC_13345 152017 153585 -1 ilvA threonine ammonia-lyase, biosynthetic Morganella morganii S2
4 group_2765 EHELCC_13595 47196 48398 -1 dpaL diaminopropionate ammonia-lyase Morganella morganii S2
5 group_2092 EHELCC_17660 34391 35377 1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB Morganella morganii S2
6 group_1321 NLDBIP_13685 152017 153585 -1 ilvA threonine ammonia-lyase, biosynthetic Morganella morganii S4
7 group_2765 NLDBIP_14040 68071 69273 -1 dpaL diaminopropionate ammonia-lyase Morganella morganii S4
8 group_2092 NLDBIP_19330 10336 11322 1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB Morganella morganii S4
9 group_2765 LHKJJB_08810 90476 91678 1 dpaL diaminopropionate ammonia-lyase Morganella morganii S3
10 group_1321 LHKJJB_12870 8858 10426 1 ilvA threonine ammonia-lyase, biosynthetic Morganella morganii S3
11 group_2092 LHKJJB_18100 34391 35377 1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB Morganella morganii S3
12 group_2765 HKOGLL_08360 90476 91678 1 dpaL diaminopropionate ammonia-lyase Morganella morganii S5
13 group_1321 HKOGLL_12160 152017 153585 -1 ilvA threonine ammonia-lyase, biosynthetic Morganella morganii S5
14 group_2092 HKOGLL_18980 6677 7663 -1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB Morganella morganii S5
15 group_2092 F4V73_RS07945 1655608 1656594 -1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB Morganella psychrotolerans
16 group_2765 F4V73_RS13280 283845 285044 1 dpaL diaminopropionate ammonia-lyase Morganella psychrotolerans
17 group_1321 F4V73_RS18710 9098 10663 1 ilvA threonine ammonia-lyase, biosynthetic Morganella psychrotolerans
18 group_2092 PMI_RS05955 1307395 1308366 -1 threo-3-hydroxy-L-aspartate ammonia-lyase Proteus mirabilis HI4320
19 group_1321 PMI_RS16420 3620735 3622309 1 ilvA threonine ammonia-lyase, biosynthetic Proteus mirabilis HI4320