Orthogroup:group_2789


Homologs in group_2789

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_08935 FBDBKF_08935 Morganella morganii S1 nikB nickel ABC transporter permease subunit NikB
EHELCC_10475 EHELCC_10475 Morganella morganii S2 nikB nickel ABC transporter permease subunit NikB
NLDBIP_10820 NLDBIP_10820 Morganella morganii S4 nikB nickel ABC transporter permease subunit NikB
LHKJJB_10535 LHKJJB_10535 Morganella morganii S3 nikB nickel ABC transporter permease subunit NikB
HKOGLL_13595 HKOGLL_13595 Morganella morganii S5 nikB nickel ABC transporter permease subunit NikB
PMI_RS14565 PMI_RS14565 Proteus mirabilis HI4320 - ABC transporter permease subunit

Distribution of group_2789 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2789 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2789

Orthogroup content: 6 members

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This page summarizes the annotation of all members of the orthologous group group_2789.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 nikB 5
2 - 1

Product

# Product Occurence
1 nickel ABC transporter permease subunit NikB 5
2 ABC transporter permease subunit 1

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0601 6 EP Amino acid transport and metabolism (E)
Inorganic ion transport and metabolism (P)		 ABC-type dipeptide/oligopeptide/nickel transport system, permease component

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K15585 6 nickel transport system permease protein ABC transporters -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF00528 6 Binding-protein-dependent transport system inner membrane component
PF19300 6 Binding-prot-dependent transport system membrane comp, N-term

Annotations of the 76 SwissProt hits

Annotation Number of occurrences
Di/tripeptide transport system permease protein DppB 1
Dipeptide transport system permease protein DppB 7
Glutathione transport system permease protein GsiC 16
Inner membrane ABC transporter permease protein YejB 2
Metal-staphylopine import system permease protein CntB 2
Metal-staphylopine import system permease protein CntC 2
Nickel import system permease protein NikB 9
Nickel transport system permease protein NikB 1
Oligopeptide transport system permease protein AmiC 2
Oligopeptide transport system permease protein AppB 1
Oligopeptide transport system permease protein OppB 11
Peptide transport system permease protein SapB 4
Peptidoglycan transport system permease protein YejB 1
Probable D,D-dipeptide transport system permease protein DdpB 1
Probable peptide ABC transporter permease protein y4tP 1
Putative peptide permease protein BMEII0860 1
Putative peptide permease protein BOV_A0351 1
Putative peptide permease protein BRA0408/BS1330_II0405 1
Putative peptide transport permease protein MT1320 1
Putative peptide transport permease protein Mb1314c 1
Putative peptide transport permease protein Rv1283c 1
Putative peptide transport system permease protein BAB2_1050 1
Putative peptide transport system permease protein BAB2_1051 1
Putative peptide transport system permease protein BMEII0207/BMEII0208 1
Putative peptide transport system permease protein BMEII0209 1
Putative peptide transport system permease protein BRA1092/BS1330_II1084 1
Putative peptide transport system permease protein BRA1093/BS1330_II1085 1
Putative peptide transport system permease protein BruAb2_1031 1
Putative peptide transport system permease protein BruAb2_1032 1
Putrescine export system permease protein SapB 1

Protein length

Min length 308
Max length 314
Mean length (sd) 313.0 (2.4)
Median length 314.0

Protein length distribution