Homologs in group_2092

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_15745 FBDBKF_15745 100.0 Morganella morganii S1 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
EHELCC_17660 EHELCC_17660 100.0 Morganella morganii S2 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
NLDBIP_19330 NLDBIP_19330 100.0 Morganella morganii S4 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
LHKJJB_18100 LHKJJB_18100 100.0 Morganella morganii S3 tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
F4V73_RS07945 F4V73_RS07945 95.7 Morganella psychrotolerans tdcB bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
PMI_RS05955 PMI_RS05955 36.8 Proteus mirabilis HI4320 - threo-3-hydroxy-L-aspartate ammonia-lyase

Distribution of the homologs in the orthogroup group_2092

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2092

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGF9 2.39e-175 491 79 0 323 3 tdcB L-threonine dehydratase catabolic TdcB Shigella flexneri
P0AGF6 2.39e-175 491 79 0 323 1 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli (strain K12)
P0AGF7 2.39e-175 491 79 0 323 3 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGF8 2.39e-175 491 79 0 323 3 tdcB L-threonine dehydratase catabolic TdcB Escherichia coli O157:H7
P11954 1.16e-171 482 78 0 323 1 tdcB L-threonine dehydratase catabolic TdcB Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8NWQ4 3.33e-113 335 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MW2)
Q6G9C4 3.33e-113 335 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MSSA476)
Q6GGX0 3.33e-113 335 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain MRSA252)
Q5HFY5 3.33e-113 335 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain COL)
Q2FYJ3 3.33e-113 335 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FH01 3.33e-113 335 55 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain USA300)
Q7A5L8 1.82e-112 333 54 2 318 1 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain N315)
Q99U50 1.82e-112 333 54 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2YY67 1.59e-111 330 54 2 318 3 tdcB L-threonine dehydratase catabolic TdcB Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q9WYJ1 1.04e-85 266 49 1 316 1 TM_0356 L-threonine ammonia-lyase Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q74FW6 3.63e-72 231 44 2 318 1 tdcB L-threonine ammonia-lyase Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
Q54HH2 6.51e-67 216 38 2 318 1 srr Serine racemase Dictyostelium discoideum
P36007 5.56e-63 206 38 2 320 1 SRY1 L-threo-3-hydroxyaspartate ammonia-lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q9KC63 2.09e-62 207 39 3 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
A4F2N8 1.69e-61 201 37 1 312 1 thadh L-threo-3-hydroxyaspartate ammonia-lyase Pseudomonas sp.
P46493 7.29e-60 202 39 1 309 3 ilvA L-threonine dehydratase biosynthetic IlvA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8CNK9 9.58e-60 200 37 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HMF5 9.58e-60 200 37 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
O59791 1.07e-59 197 37 2 318 1 sry1 Serine racemase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P37946 2e-57 194 37 3 319 3 ilvA L-threonine dehydratase biosynthetic IlvA Bacillus subtilis (strain 168)
Q7XSN8 3.01e-56 189 35 2 315 1 SERR Serine racemase Oryza sativa subsp. japonica
A2XWA9 3.01e-56 189 35 2 315 3 OsI_16936 Serine racemase Oryza sativa subsp. indica
Q9AXU4 5.43e-56 194 37 2 290 1 TD Threonine dehydratase Nicotiana attenuata
Q9CKJ2 7.42e-56 192 39 3 287 3 ilvA L-threonine dehydratase biosynthetic IlvA Pasteurella multocida (strain Pm70)
Q2PGG3 4.86e-55 185 36 2 310 1 SR Serine racemase Arabidopsis thaliana
Q02145 5.07e-55 187 37 3 322 3 ilvA L-threonine dehydratase biosynthetic IlvA Lactococcus lactis subsp. lactis (strain IL1403)
P04968 1.39e-54 189 39 3 309 1 ilvA L-threonine dehydratase biosynthetic IlvA Escherichia coli (strain K12)
P25306 1.5e-54 190 38 0 288 1 TD2 Threonine dehydratase 2 biosynthetic, chloroplastic Solanum lycopersicum
P20506 2.55e-54 188 38 4 309 3 ilvA L-Threonine dehydratase biosynthetic IlvA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A0JNI4 1.16e-52 179 33 4 326 2 SRR Serine racemase Bos taurus
Q10725 1.7e-51 176 36 4 291 1 psdht Phenylserine dehydratase Ralstonia pickettii
Q9GZT4 2.87e-51 176 33 4 315 1 SRR Serine racemase Homo sapiens
V5Y0V0 1.9e-50 175 36 4 297 3 AKTS1-1 Threonine dehydratase-like protein AKTS1-1 Alternaria alternata
Q49Z16 2.35e-50 176 36 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
A1B8Z2 3.64e-50 172 33 4 314 1 bhcB beta-hydroxyaspartate dehydratase Paracoccus denitrificans (strain Pd 1222)
O42615 6.6e-50 177 38 3 295 3 ILV1 Threonine dehydratase, mitochondrial Blastobotrys adeninivorans
P55664 1.08e-49 171 34 2 318 3 NGR_a01490 Putative threonine dehydratase Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q39469 1.86e-49 176 33 3 320 2 None Threonine dehydratase biosynthetic, chloroplastic Cicer arietinum
P00927 3.83e-49 176 37 4 297 1 ILV1 Threonine dehydratase, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P53607 4.23e-49 174 36 2 299 3 ilvA L-threonine dehydratase biosynthetic IlvA Burkholderia multivorans (strain ATCC 17616 / 249)
Q5HEE0 9.11e-49 171 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain COL)
Q2FWJ9 9.11e-49 171 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q2FF63 9.11e-49 171 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain USA300)
Q8NVI8 1.01e-48 171 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MW2)
Q3V7T4 1.01e-48 171 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MSSA476)
O94634 1.22e-48 174 37 5 317 3 SPBC1677.03c Threonine dehydratase, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q7A4H2 2.3e-48 170 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain N315)
Q99SJ1 2.3e-48 170 35 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q4L7U4 5.4e-48 169 35 4 320 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus haemolyticus (strain JCSC1435)
Q3V7T5 7.1e-47 166 34 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain MRSA252)
A0FKE6 1.5e-46 169 36 3 297 1 TD1 Threonine dehydratase 1 biosynthetic, chloroplastic Solanum lycopersicum
Q2YUE8 1.85e-46 165 34 4 323 3 ilvA L-threonine dehydratase biosynthetic IlvA Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q04513 1.16e-43 158 35 4 320 3 ilvA L-threonine dehydratase biosynthetic IlvA Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q9QZX7 2.75e-42 152 33 6 321 1 Srr Serine racemase Mus musculus
Q9ZSS6 6.88e-42 156 35 3 287 1 OMR1 Threonine dehydratase biosynthetic, chloroplastic Arabidopsis thaliana
Q76EQ0 1.45e-41 150 33 4 320 1 Srr Serine racemase Rattus norvegicus
P9WG95 2.75e-41 152 36 4 318 1 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG94 2.75e-41 152 36 4 318 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66898 2.75e-41 152 36 4 318 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q9X7F1 1.7e-40 149 37 5 324 3 ilvA L-threonine dehydratase biosynthetic IlvA Mycobacterium leprae (strain TN)
P31212 5.21e-18 87 33 0 172 2 TD Threonine dehydratase biosynthetic, chloroplastic (Fragment) Solanum tuberosum
P25379 1.33e-15 80 23 8 276 1 CHA1 Catabolic L-serine/threonine dehydratase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
B5VKE8 9.23e-15 77 22 7 320 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain AWRI1631)
C8ZAU6 4.22e-14 75 21 5 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse)
B3LU13 4.22e-14 75 21 5 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain RM11-1a)
A6ZVB1 5.82e-14 75 21 5 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae (strain YJM789)
Q86B06 7.03e-14 75 23 6 290 3 sds L-serine dehydratase Dictyostelium discoideum
P09123 7.54e-14 74 26 8 274 3 thrC Threonine synthase Bacillus sp. (strain ULM1)
P0CF23 9.79e-14 74 20 5 281 3 SDL1 L-serine dehydratase Saccharomyces cerevisiae
Q8R238 1.06e-13 74 25 3 296 1 Sdsl Serine dehydratase-like Mus musculus
Q8VBT2 1.37e-13 73 25 9 320 1 Sds L-serine dehydratase/L-threonine deaminase Mus musculus
A0A6N3IN21 1.01e-12 71 25 3 296 1 Sdsl Serine dehydratase-like Rattus norvegicus
Q0VCW4 2.29e-12 70 27 9 305 2 SDS L-serine dehydratase/L-threonine deaminase Bos taurus
Q8TQD4 1.23e-11 68 28 16 313 1 thrC Threonine synthase Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
P20132 1.79e-11 67 24 7 311 1 SDS L-serine dehydratase/L-threonine deaminase Homo sapiens
Q9K7E3 9.59e-10 62 28 8 274 3 thrC Threonine synthase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
Q58860 3.77e-09 60 26 11 274 3 thrC Threonine synthase Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q96GA7 4.48e-09 60 24 3 309 1 SDSL Serine dehydratase-like Homo sapiens
P04990 1.57e-08 58 26 13 320 3 thrC Threonine synthase Bacillus subtilis (strain 168)
A0R220 1.77e-08 58 25 8 287 1 thrC Threonine synthase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P09367 5.3e-08 57 23 11 353 1 Sds L-serine dehydratase/L-threonine deaminase Rattus norvegicus
P45837 6.13e-08 57 25 8 290 3 thrC Threonine synthase Mycobacterium leprae (strain TN)
P9WG59 8.65e-08 56 25 8 290 1 thrC Threonine synthase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WG58 8.65e-08 56 25 8 290 3 thrC Threonine synthase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
P66903 8.65e-08 56 25 8 290 3 thrC Threonine synthase Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
Q59447 1.99e-07 55 31 5 180 3 cysK Cysteine synthase Flavobacterium sp. (strain K3-15 / DSM ID92-509)
P74193 3.89e-06 51 24 10 284 3 thrC Threonine synthase Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
P66899 4.98e-06 51 22 5 195 1 ygeX Diaminopropionate ammonia-lyase Escherichia coli (strain K12)
P66900 4.98e-06 51 22 5 195 3 ygeX Diaminopropionate ammonia-lyase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P66901 4.98e-06 51 22 5 195 3 ygeX Diaminopropionate ammonia-lyase Escherichia coli O157:H7
P63872 1.04e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus aureus (strain MW2)
Q6GBX5 1.04e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus aureus (strain MSSA476)
Q6GJF8 1.04e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus aureus (strain MRSA252)
P63871 1.04e-05 50 26 5 179 1 cysK Cysteine synthase Staphylococcus aureus (strain N315)
P63870 1.04e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HIG2 1.04e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus aureus (strain COL)
Q8CMT6 1.08e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HRP1 1.08e-05 50 26 5 179 3 cysK Cysteine synthase Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q04G28 7.74e-05 47 27 9 248 3 dsdA Probable D-serine dehydratase Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
O34476 0.000139 46 28 3 133 3 ytkP Probable cysteine synthase Bacillus subtilis (strain 168)
P0CF21 0.000719 42 25 1 100 5 YIL168W Putative truncated L-serine dehydratase YIL168W Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
B5ZNC1 0.000726 44 24 9 230 3 dsdA Probable D-serine dehydratase Rhizobium leguminosarum bv. trifolii (strain WSM2304)

  • Number of RefSeq hits:

General

Source Morganella morganii S5
Locus tag HKOGLL_18980
Feature type CDS
Gene tdcB
Product bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB
Location 6677 - 7663 (strand: -1)
Length 987 (nucleotides) / 328 (amino acids)

Contig

Accession ZDB_710
Length 17998 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2092
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00291 Pyridoxal-phosphate dependent enzyme

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1171 Amino acid transport and metabolism (E) E Threonine deaminase

Kegg Ortholog Annotation(s)

Protein Sequence

MITYDLPVTIKDIIDAQKTIRGHVYKTGMPKSNYLSEKCNGTIHLKFENMQRTGSFKLRGAFNKLSSLTPEERAQGIVACSAGNHAQGVSLSCAMLGINGKVVMPTGAPKSKIAATSDYSAEVVLHGNNFNDTIAKAREIIEQEGRIFIPPYDDEKVIAGQGTIGLEILEDLYDVDNVIVPIGGGGLIAGVAVALKSINPTINVIGVQSENVHGMEASYRAGKITTHRDAGTVADGCDVSTPGSITYDIVKELVTDIILVTEEEIRESMIALIQRNKVVTEGAGALASAAILSGKLKKYIEHKKTVSIISGGNIDLTRISEIIGTHEK

Flanking regions ( +/- flanking 50bp)

ATAGTTAGACTCAATTTTAATATATATAAAAAGATAGGACGAGGTTTGTCATGATTACATACGATCTGCCGGTAACCATTAAAGATATCATTGATGCACAAAAAACCATCAGAGGACATGTCTATAAAACGGGTATGCCGAAGTCCAACTATTTAAGTGAAAAGTGCAACGGCACAATCCACTTAAAATTTGAGAACATGCAGCGCACAGGTTCATTTAAACTCCGTGGTGCATTTAACAAGTTAAGTTCGCTGACACCAGAAGAAAGAGCACAGGGCATCGTTGCCTGCTCAGCCGGTAACCATGCTCAGGGCGTTTCTTTATCCTGCGCTATGTTAGGTATCAACGGCAAAGTTGTTATGCCTACCGGTGCACCAAAATCCAAAATTGCAGCAACCTCAGATTACTCTGCAGAAGTTGTTCTGCACGGTAATAACTTCAATGACACGATTGCTAAAGCAAGAGAGATCATTGAGCAGGAAGGCCGTATCTTTATCCCGCCATACGATGACGAAAAAGTGATCGCAGGCCAGGGGACTATCGGTCTGGAAATCCTTGAAGATCTGTATGACGTCGATAACGTTATCGTTCCAATCGGCGGCGGCGGTCTGATTGCCGGTGTTGCAGTTGCTCTGAAATCCATCAACCCGACTATTAATGTGATCGGTGTCCAATCTGAAAACGTTCATGGTATGGAAGCATCATATCGTGCTGGTAAAATCACGACCCATCGTGATGCCGGTACTGTGGCAGATGGTTGTGATGTTTCGACTCCGGGCAGTATCACGTATGACATCGTGAAAGAGCTGGTGACAGACATCATTCTGGTAACAGAAGAAGAAATCCGCGAAAGCATGATTGCGTTAATCCAGCGCAACAAAGTAGTGACCGAAGGTGCCGGTGCACTGGCGTCTGCTGCGATTCTTAGCGGGAAACTGAAAAAATATATCGAACACAAGAAGACAGTCAGCATCATTTCCGGCGGGAACATTGACCTGACTCGTATCTCTGAAATTATTGGTACCCACGAAAAATAATATTTGCATAGTCTTTTAAAAGGAAAAGCAACATGAGTACTGACAAAACC