COG0847


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0847, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 16 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description DNA polymerase III, epsilon subunit or related 3'-5' exonuclease
Function(s) descr. Replication, recombination and repair (L)

Occurence in the database

COG0847 is associated with 16 different proteins (see tab "Protein list" and "Profile")
The 16 proteins are classified into 3 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_274 FBDBKF_05700 146150 146797 1 rnt ribonuclease T Morganella morganii S1
1 group_1864 FBDBKF_13940 82024 82758 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S1
2 group_1864 EHELCC_11610 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S2
3 group_274 EHELCC_11890 34697 35344 -1 rnt ribonuclease T Morganella morganii S2
4 group_1864 NLDBIP_11955 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S4
5 group_274 NLDBIP_12230 34652 35299 -1 rnt ribonuclease T Morganella morganii S4
6 group_1864 LHKJJB_11815 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S3
7 group_274 LHKJJB_12090 34697 35344 -1 rnt ribonuclease T Morganella morganii S3
8 group_1864 HKOGLL_10425 166900 167634 -1 dnaQ DNA polymerase III subunit epsilon Morganella morganii S5
9 group_274 HKOGLL_10705 34697 35344 -1 rnt ribonuclease T Morganella morganii S5
10 group_274 F4V73_RS03605 767819 768460 -1 rnt ribonuclease T Morganella psychrotolerans
11 group_1864 F4V73_RS12795 159390 160163 -1 dnaQ DNA polymerase III subunit epsilon Morganella psychrotolerans
12 group_274 F4V73_RS17870 17511 18122 -1 3'-5' exonuclease Morganella psychrotolerans
13 group_1864 PMI_RS01100 271246 272004 1 dnaQ DNA polymerase III subunit epsilon Proteus mirabilis HI4320
14 group_274 PMI_RS06730 1470217 1470855 1 rnt ribonuclease T Proteus mirabilis HI4320
15 group_4592 PMI_RS12275 2723224 2724129 -1 3'-5' exonuclease Proteus mirabilis HI4320