Help to interpret the results
Three outputs have been generated:
General: this tab contains the description, occurence in the database and other information related to the selected COG entry COG0847
Protein list: lists the 16 occurences of the COG entry within the database. The table reports information on each occurence.
Profile: phylogenetic tree annotated with
- the presence of the COG entry of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entry has been clustered.
Orthogroups are shown in red if they are annotated with that particular COG entry in a given genome , in green otherwise, i.e. if there is a discrepency between orthogroup clustering and COG entry prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entry.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entry prediction.
Description
| Description | DNA polymerase III, epsilon subunit or related 3'-5' exonuclease |
|---|---|
| Function(s) descr. | Replication, recombination and repair (L) |
Occurence in the database
| COG0847 is associated with 16 different proteins |
| The 16 proteins are classified into 4 different orthogroup(s) |
| Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism | |
|---|---|---|---|---|---|---|---|---|
| 0 | group_1088 | FBDBKF_05700 | 146150 | 146797 | 1 | rnt | ribonuclease T | Morganella morganii S1 |
| 1 | group_1902 | FBDBKF_13940 | 82024 | 82758 | -1 | dnaQ | DNA polymerase III subunit epsilon | Morganella morganii S1 |
| 2 | group_1902 | EHELCC_11610 | 166900 | 167634 | -1 | dnaQ | DNA polymerase III subunit epsilon | Morganella morganii S2 |
| 3 | group_1088 | EHELCC_11890 | 34697 | 35344 | -1 | rnt | ribonuclease T | Morganella morganii S2 |
| 4 | group_1902 | NLDBIP_11955 | 166900 | 167634 | -1 | dnaQ | DNA polymerase III subunit epsilon | Morganella morganii S4 |
| 5 | group_1088 | NLDBIP_12230 | 34652 | 35299 | -1 | rnt | ribonuclease T | Morganella morganii S4 |
| 6 | group_1902 | LHKJJB_11815 | 166900 | 167634 | -1 | dnaQ | DNA polymerase III subunit epsilon | Morganella morganii S3 |
| 7 | group_1088 | LHKJJB_12090 | 34697 | 35344 | -1 | rnt | ribonuclease T | Morganella morganii S3 |
| 8 | group_1902 | HKOGLL_10425 | 166900 | 167634 | -1 | dnaQ | DNA polymerase III subunit epsilon | Morganella morganii S5 |
| 9 | group_1088 | HKOGLL_10705 | 34697 | 35344 | -1 | rnt | ribonuclease T | Morganella morganii S5 |
| 10 | group_1088 | F4V73_RS03605 | 767819 | 768460 | -1 | rnt | ribonuclease T | Morganella psychrotolerans |
| 11 | group_1902 | F4V73_RS12795 | 159390 | 160163 | -1 | dnaQ | DNA polymerase III subunit epsilon | Morganella psychrotolerans |
| 12 | group_4470 | F4V73_RS17870 | 17511 | 18122 | -1 | 3'-5' exonuclease | Morganella psychrotolerans | |
| 13 | group_1902 | PMI_RS01100 | 271246 | 272004 | 1 | dnaQ | DNA polymerase III subunit epsilon | Proteus mirabilis HI4320 |
| 14 | group_1088 | PMI_RS06730 | 1470217 | 1470855 | 1 | rnt | ribonuclease T | Proteus mirabilis HI4320 |
| 15 | group_4551 | PMI_RS12275 | 2723224 | 2724129 | -1 | 3'-5' exonuclease | Proteus mirabilis HI4320 |
