COG0823
Help to interpret the results
Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0823, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries
within the database. 14 occurences are identified.
The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction.
Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.
Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.
Description
Description | Periplasmic component TolB of the Tol biopolymer transport system |
---|---|
Function(s) descr. | Intracellular trafficking, secretion, and vesicular transport (U) |
Occurence in the database
COG0823 is associated with 14 different proteins (see tab "Protein list" and "Profile") |
The 14 proteins are classified into 2 different orthogroup(s) |
# | Orthogroup | Locus | Start | Stop | S. | Gene | Product | Organism |
---|---|---|---|---|---|---|---|---|
0 | group_1506 | FBDBKF_09740 | 44019 | 45311 | -1 | tolB | Tol-Pal system protein TolB | Morganella morganii S1 |
1 | group_1723 | FBDBKF_12030 | 56603 | 57883 | -1 | Biopolymer transporter Tol | Morganella morganii S1 | |
2 | group_1506 | EHELCC_04540 | 235984 | 237276 | -1 | tolB | Tol-Pal system protein TolB | Morganella morganii S2 |
3 | group_1723 | EHELCC_14275 | 76822 | 78102 | 1 | Biopolymer transporter Tol | Morganella morganii S2 | |
4 | group_1506 | NLDBIP_04540 | 235780 | 237072 | -1 | tolB | Tol-Pal system protein TolB | Morganella morganii S4 |
5 | group_1723 | NLDBIP_15370 | 80759 | 82039 | 1 | Biopolymer transporter Tol | Morganella morganii S4 | |
6 | group_1506 | LHKJJB_14090 | 98306 | 99598 | 1 | tolB | Tol-Pal system protein TolB | Morganella morganii S3 |
7 | group_1723 | LHKJJB_15240 | 56603 | 57883 | -1 | Biopolymer transporter Tol | Morganella morganii S3 | |
8 | group_1506 | HKOGLL_12445 | 44800 | 46092 | -1 | tolB | Tol-Pal system protein TolB | Morganella morganii S5 |
9 | group_1723 | HKOGLL_14360 | 43266 | 44546 | -1 | Biopolymer transporter Tol | Morganella morganii S5 | |
10 | group_1506 | F4V73_RS00600 | 127299 | 128591 | 1 | tolB | Tol-Pal system beta propeller repeat protein TolB | Morganella psychrotolerans |
11 | group_1723 | F4V73_RS14625 | 158167 | 159450 | 1 | DUF3748 domain-containing protein | Morganella psychrotolerans | |
12 | group_1506 | PMI_RS02870 | 630568 | 631863 | 1 | tolB | Tol-Pal system beta propeller repeat protein TolB | Proteus mirabilis HI4320 |
13 | group_1723 | PMI_RS14135 | 3137621 | 3138907 | -1 | DUF3748 domain-containing protein | Proteus mirabilis HI4320 |