Homologs in group_1723

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_12030 FBDBKF_12030 60.3 Morganella morganii S1 - Biopolymer transporter Tol
EHELCC_14275 EHELCC_14275 60.3 Morganella morganii S2 - Biopolymer transporter Tol
NLDBIP_15370 NLDBIP_15370 60.3 Morganella morganii S4 - Biopolymer transporter Tol
LHKJJB_15240 LHKJJB_15240 60.3 Morganella morganii S3 - Biopolymer transporter Tol
HKOGLL_14360 HKOGLL_14360 60.3 Morganella morganii S5 - Biopolymer transporter Tol
F4V73_RS14625 F4V73_RS14625 57.7 Morganella psychrotolerans - DUF3748 domain-containing protein

Distribution of the homologs in the orthogroup group_1723

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1723

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P31455 1.45e-172 492 57 3 407 4 yidR Uncharacterized protein YidR Escherichia coli (strain K12)
B4UDE1 0.000209 47 29 1 81 3 tolB Tol-Pal system protein TolB Anaeromyxobacter sp. (strain K)
B8JD21 0.000236 47 29 1 81 3 tolB Tol-Pal system protein TolB Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258)
B3CUF6 0.000309 46 24 9 216 3 tolB Tol-Pal system protein TolB Orientia tsutsugamushi (strain Ikeda)
Q2INP9 0.00052 45 28 1 81 3 tolB Tol-Pal system protein TolB Anaeromyxobacter dehalogenans (strain 2CP-C)
A5CBX4 0.000736 45 24 9 216 3 tolB Tol-Pal system protein TolB Orientia tsutsugamushi (strain Boryong)

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS14135
Feature type CDS
Gene -
Product DUF3748 domain-containing protein
Location 3137621 - 3138907 (strand: -1)
Length 1287 (nucleotides) / 428 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_1723
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF07676 WD40-like Beta Propeller Repeat
PF12566 Protein of unknown function (DUF3748)

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0823 Intracellular trafficking, secretion, and vesicular transport (U) U Periplasmic component TolB of the Tol biopolymer transport system

Protein Sequence

MSFQEQQITFDSRHHQLTNINVWTPDSQWLVYDVRPNGGSFTGLTIEKIHAKTKQQQIIYTATQGAHVGVATVSPVAPVRYAFIHGPENPDDLWHYDFHHRRGVIVNEQEDLGAVNIDACSLTLPYQAGALRGGTHVHVFSPDGTRLSFTYNDHIMHELGREFDQRNVAIAVPLKAVKVAKKHPREYDGEYFCTLISQTVAYPQKGSDEINKAYEECWIGKQGYTKADGSQQRWAIAFIGDTVSESGEKVADIFLVDLPDDDHAFSLEGDKPLAGTETTMPAPAQGIEQIRLTNTHHRKYPGVLNQPRHWLRSSPQGDAIAFLMKDDNGVVQLYTVSPATKAIRQVTSQQWDIQSAFTWSYSGEYLTFICDNSVMLCNAKTGELTRLTDKTAQAPSGDAVVFSPNDQYIAFMRDIDGYRQIFTVESGL

Flanking regions ( +/- flanking 50bp)

AATCAATTAGTTTTTATAATGTGGAAATTTATTTCCCGATAAGGATAACTATGTCTTTTCAGGAACAACAGATTACATTTGATAGTCGTCATCATCAGTTAACCAATATAAATGTTTGGACACCAGATAGCCAGTGGTTAGTTTATGATGTACGTCCCAATGGTGGATCTTTTACAGGATTAACCATAGAAAAAATTCATGCGAAAACAAAACAGCAACAGATAATTTACACCGCCACTCAAGGTGCTCATGTTGGGGTTGCCACAGTCAGCCCTGTGGCACCGGTGCGTTATGCTTTTATTCATGGCCCAGAAAATCCCGATGATTTATGGCATTATGATTTTCATCACCGTCGCGGTGTGATTGTTAATGAGCAGGAAGATCTTGGTGCAGTTAATATCGATGCTTGTTCCCTGACATTGCCTTATCAAGCTGGCGCGTTACGTGGTGGAACCCATGTGCATGTGTTTAGCCCTGATGGTACACGTTTAAGCTTTACTTATAATGATCACATAATGCATGAGTTAGGGCGCGAGTTCGATCAACGTAATGTTGCAATCGCAGTGCCACTCAAAGCCGTTAAAGTTGCGAAAAAGCACCCCCGTGAGTATGACGGTGAATATTTCTGTACCCTAATAAGCCAAACAGTCGCTTATCCACAAAAGGGCAGTGATGAAATTAATAAAGCCTATGAAGAGTGTTGGATAGGTAAACAAGGTTATACCAAAGCTGATGGCTCACAACAGCGTTGGGCTATTGCTTTTATTGGTGATACGGTCAGTGAAAGTGGTGAGAAGGTCGCTGATATCTTCTTAGTTGATTTGCCAGATGATGATCATGCTTTCAGTCTAGAAGGTGATAAACCTCTGGCAGGAACAGAGACGACGATGCCAGCTCCTGCACAAGGGATTGAACAAATCCGCTTGACGAATACCCACCATAGAAAATATCCCGGTGTTTTAAATCAACCTCGTCATTGGTTAAGAAGTTCACCGCAAGGAGATGCGATTGCTTTTCTGATGAAAGATGATAATGGTGTTGTCCAGCTATATACCGTTTCGCCAGCCACCAAAGCGATTAGACAGGTCACTTCACAGCAATGGGATATTCAATCTGCATTCACTTGGAGCTATAGCGGAGAATATCTCACCTTTATTTGTGATAATAGCGTGATGTTATGTAATGCTAAAACAGGTGAATTAACGCGATTAACTGATAAAACAGCACAAGCACCAAGTGGTGACGCAGTCGTATTTTCACCTAATGATCAGTATATTGCTTTTATGCGTGATATTGATGGTTATCGGCAAATATTTACGGTAGAAAGTGGGTTATAACGTTTTTTATTGTGAAAGGTAACTGATTTTGATGTTACCTTTTCTATTAT