COG0621


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG0621, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 14 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description tRNA A37 methylthiotransferase MiaB
Function(s) descr. Translation, ribosomal structure and biogenesis (J)

Occurence in the database

COG0621 is associated with 14 different proteins (see tab "Protein list" and "Profile")
The 14 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_892 FBDBKF_04660 130950 132290 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S1
1 group_1537 FBDBKF_09970 86693 88132 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S1
2 group_1537 EHELCC_04770 278658 280097 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S2
3 group_892 EHELCC_05950 190407 191747 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S2
4 group_1537 NLDBIP_04770 278454 279893 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S4
5 group_892 NLDBIP_06270 231472 232812 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S4
6 group_892 LHKJJB_03150 208996 210336 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S3
7 group_1537 LHKJJB_13860 55485 56924 -1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S3
8 group_892 HKOGLL_06625 130860 132200 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella morganii S5
9 group_1537 HKOGLL_12675 87474 88913 1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella morganii S5
10 group_1537 F4V73_RS00375 84472 85911 -1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Morganella psychrotolerans
11 group_892 F4V73_RS09110 1904705 1906045 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Morganella psychrotolerans
12 group_1537 PMI_RS02205 514549 515979 -1 miaB tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB Proteus mirabilis HI4320
13 group_892 PMI_RS15730 3495155 3496486 -1 rimO 30S ribosomal protein S12 methylthiotransferase RimO Proteus mirabilis HI4320